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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0160
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    48   5e-06
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    48   5e-06
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    46   3e-05
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.8  
At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative (CH...    29   4.2  
At1g80580.1 68414.m09453 ethylene-responsive element-binding fam...    28   7.4  
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)            27   9.8  
At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putati...    27   9.8  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 33/87 (37%), Positives = 48/87 (55%)
 Frame = +2

Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 437 SGLPFSYWTFCIQFVPAKAVIPQPYVI 517
           SGL      F I  VP + V  Q YVI
Sbjct: 115 SGLLLVTGPFKINGVPLRRV-NQAYVI 140


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 33/87 (37%), Positives = 48/87 (55%)
 Frame = +2

Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436
           P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114

Query: 437 SGLPFSYWTFCIQFVPAKAVIPQPYVI 517
           SGL      F I  VP + V  Q YVI
Sbjct: 115 SGLLLVTGPFKINGVPLRRV-NQAYVI 140


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 32/87 (36%), Positives = 47/87 (54%)
 Frame = +2

Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436
           P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L 
Sbjct: 57  PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLS 114

Query: 437 SGLPFSYWTFCIQFVPAKAVIPQPYVI 517
           SGL      F I  VP + V  Q YVI
Sbjct: 115 SGLLLVTGPFKINGVPLRRV-NQAYVI 140


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 257 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 346
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative
           (CHX21)  and similar to hypothetical proteins;
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 232

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 496 NGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSS 368
           N LS  E  ++G  TK++    +S + N   C+S+S  +A+SS
Sbjct: 119 NSLSEEEEESEGSRTKKKQRRDDSEQRNSDLCISSSPYSASSS 161


>At1g80580.1 68414.m09453 ethylene-responsive element-binding family
           protein contains AP2 DNA-binding domain; similar to
           EREBP-3 (GI:1208496)  [Nicotiana tabacum]
          Length = 256

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
 Frame = -2

Query: 490 LSGHELNAKGPVTKRQTAGQNSNKY-----NPLACMSTSEENANS 371
           + GH L    P++      QNS  Y     +PL CM   E N  S
Sbjct: 7   VDGHRLQYSVPLSSMHETSQNSETYGLSKESPLVCMPLFETNTTS 51


>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 
          Length = 135

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 359 LKIGTVCILLAGRHAGKRVVLVGILPSGLPFSYWTFCI 472
           +K G   ILL GR+ GK+ V+V     G     +  C+
Sbjct: 5   MKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCL 42


>At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putative
           / proton pump 10, putative / proton-exporting ATPase,
           putative strong similarity to SP|Q43128 ATPase 10,
           plasma membrane-type (EC 3.6.3.6) (Proton pump 10)
           {Arabidopsis thaliana}; contains InterPro accession
           IPR001757: ATPase, E1-E2 type; contains Pfam profile
           PF00690: Cation transporter/ATPase, N-terminus
          Length = 947

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 490 LSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANS 371
           +  H L+ +G +TKR TA +     + L C  T     NS
Sbjct: 307 IGSHRLSQQGAITKRMTAIEEMAGMDVLCCDKTGTLTLNS 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,520,638
Number of Sequences: 28952
Number of extensions: 316666
Number of successful extensions: 787
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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