BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0160 (734 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 48 5e-06 At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 48 5e-06 At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 46 3e-05 At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.8 At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative (CH... 29 4.2 At1g80580.1 68414.m09453 ethylene-responsive element-binding fam... 28 7.4 At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 27 9.8 At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putati... 27 9.8 >At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309 from [Cyanophora paradoxa] Length = 233 Score = 48.4 bits (110), Expect = 5e-06 Identities = 33/87 (37%), Positives = 48/87 (55%) Frame = +2 Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436 P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114 Query: 437 SGLPFSYWTFCIQFVPAKAVIPQPYVI 517 SGL F I VP + V Q YVI Sbjct: 115 SGLLLVTGPFKINGVPLRRV-NQAYVI 140 >At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309 from [Cyanophora paradoxa] Length = 233 Score = 48.4 bits (110), Expect = 5e-06 Identities = 33/87 (37%), Positives = 48/87 (55%) Frame = +2 Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436 P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLA 114 Query: 437 SGLPFSYWTFCIQFVPAKAVIPQPYVI 517 SGL F I VP + V Q YVI Sbjct: 115 SGLLLVTGPFKINGVPLRRV-NQAYVI 140 >At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar to 60S ribosomal protein L6 GI:7208784 from [Cicer arietinum] Length = 233 Score = 45.6 bits (103), Expect = 3e-05 Identities = 32/87 (36%), Positives = 47/87 (54%) Frame = +2 Query: 257 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 436 P+++ FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV + L Sbjct: 57 PVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLS 114 Query: 437 SGLPFSYWTFCIQFVPAKAVIPQPYVI 517 SGL F I VP + V Q YVI Sbjct: 115 SGLLLVTGPFKINGVPLRRV-NQAYVI 140 >At2g29210.1 68415.m03550 splicing factor PWI domain-containing protein contains Pfam profile PF01480: PWI domain Length = 878 Score = 29.9 bits (64), Expect = 1.8 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = +2 Query: 257 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 346 P++RR+S P +E++ S GGR S H+++ Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555 >At2g37910.1 68415.m04653 cation/hydrogen exchanger, putative (CHX21) and similar to hypothetical proteins; monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563 Length = 232 Score = 28.7 bits (61), Expect = 4.2 Identities = 15/43 (34%), Positives = 25/43 (58%) Frame = -2 Query: 496 NGLSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANSS 368 N LS E ++G TK++ +S + N C+S+S +A+SS Sbjct: 119 NSLSEEEEESEGSRTKKKQRRDDSEQRNSDLCISSSPYSASSS 161 >At1g80580.1 68414.m09453 ethylene-responsive element-binding family protein contains AP2 DNA-binding domain; similar to EREBP-3 (GI:1208496) [Nicotiana tabacum] Length = 256 Score = 27.9 bits (59), Expect = 7.4 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 5/45 (11%) Frame = -2 Query: 490 LSGHELNAKGPVTKRQTAGQNSNKY-----NPLACMSTSEENANS 371 + GH L P++ QNS Y +PL CM E N S Sbjct: 7 VDGHRLQYSVPLSSMHETSQNSETYGLSKESPLVCMPLFETNTTS 51 >At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) Length = 135 Score = 27.5 bits (58), Expect = 9.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +2 Query: 359 LKIGTVCILLAGRHAGKRVVLVGILPSGLPFSYWTFCI 472 +K G ILL GR+ GK+ V+V G + C+ Sbjct: 5 MKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCL 42 >At1g17260.1 68414.m02102 ATPase 10, plasma membrane-type, putative / proton pump 10, putative / proton-exporting ATPase, putative strong similarity to SP|Q43128 ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump 10) {Arabidopsis thaliana}; contains InterPro accession IPR001757: ATPase, E1-E2 type; contains Pfam profile PF00690: Cation transporter/ATPase, N-terminus Length = 947 Score = 27.5 bits (58), Expect = 9.8 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -2 Query: 490 LSGHELNAKGPVTKRQTAGQNSNKYNPLACMSTSEENANS 371 + H L+ +G +TKR TA + + L C T NS Sbjct: 307 IGSHRLSQQGAITKRMTAIEEMAGMDVLCCDKTGTLTLNS 346 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,520,638 Number of Sequences: 28952 Number of extensions: 316666 Number of successful extensions: 787 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 769 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 783 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1614253080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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