BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0152 (567 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC113507-1|AAI13508.1| 1749|Homo sapiens ubiquitin protein ligas... 31 3.7 BC113505-1|AAI13506.1| 1749|Homo sapiens ubiquitin protein ligas... 31 3.7 AY061886-1|AAL32103.1| 1749|Homo sapiens ubiquitin ligase E3 alp... 31 3.7 AK027803-1|BAB55380.1| 811|Homo sapiens protein ( Homo sapiens ... 31 3.7 AF525401-1|AAO14997.1| 1709|Homo sapiens UBR1 E3a ligase protein. 31 3.7 >BC113507-1|AAI13508.1| 1749|Homo sapiens ubiquitin protein ligase E3 component n-recognin 1 protein. Length = 1749 Score = 30.7 bits (66), Expect = 3.7 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = +3 Query: 105 LKKYELNCNFKNHQVVSSFCRENAIRGGSLIIVNKDYKCKER---RDIVSLSVNGLLKWP 275 L +Y L C QVV+ R N + S + +D KC+E +DI+ L + L P Sbjct: 645 LVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVKCREEMYDKDIIMLQIGASLMDP 704 >BC113505-1|AAI13506.1| 1749|Homo sapiens ubiquitin protein ligase E3 component n-recognin 1 protein. Length = 1749 Score = 30.7 bits (66), Expect = 3.7 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = +3 Query: 105 LKKYELNCNFKNHQVVSSFCRENAIRGGSLIIVNKDYKCKER---RDIVSLSVNGLLKWP 275 L +Y L C QVV+ R N + S + +D KC+E +DI+ L + L P Sbjct: 645 LVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVKCREEMYDKDIIMLQIGASLMDP 704 >AY061886-1|AAL32103.1| 1749|Homo sapiens ubiquitin ligase E3 alpha-I protein. Length = 1749 Score = 30.7 bits (66), Expect = 3.7 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = +3 Query: 105 LKKYELNCNFKNHQVVSSFCRENAIRGGSLIIVNKDYKCKER---RDIVSLSVNGLLKWP 275 L +Y L C QVV+ R N + S + +D KC+E +DI+ L + L P Sbjct: 645 LVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVKCREEMYDKDIIMLQIGASLMDP 704 >AK027803-1|BAB55380.1| 811|Homo sapiens protein ( Homo sapiens cDNA FLJ14897 fis, clone PLACE1004743, weakly similar to PROBABLE N-END-RECOGNIZING PROTEIN. ). Length = 811 Score = 30.7 bits (66), Expect = 3.7 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = +3 Query: 105 LKKYELNCNFKNHQVVSSFCRENAIRGGSLIIVNKDYKCKER---RDIVSLSVNGLLKWP 275 L +Y L C QVV+ R N + S + +D KC+E +DI+ L + L P Sbjct: 442 LVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVKCREEMYDKDIIMLQIGASLMDP 501 >AF525401-1|AAO14997.1| 1709|Homo sapiens UBR1 E3a ligase protein. Length = 1709 Score = 30.7 bits (66), Expect = 3.7 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = +3 Query: 105 LKKYELNCNFKNHQVVSSFCRENAIRGGSLIIVNKDYKCKER---RDIVSLSVNGLLKWP 275 L +Y L C QVV+ R N + S + +D KC+E +DI+ L + L P Sbjct: 628 LVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVKCREEMYDKDIIMLQIGASLMDP 687 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 75,729,193 Number of Sequences: 237096 Number of extensions: 1376977 Number of successful extensions: 2029 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1957 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2029 length of database: 76,859,062 effective HSP length: 86 effective length of database: 56,468,806 effective search space used: 5759818212 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -