Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0150
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_4074| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               27   7.7  

>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 360 LATAPMVSLFKLS*KCILLRLAAFIAIMQRLLRLTKFCFQFCFSYI 223
           +   P+++L KL     LL +   +  +     +  FCF FC ++I
Sbjct: 757 MVAQPILALLKLCGVVFLLLVVGLLPYVDNFAHMAGFCFGFCLAFI 802


>SB_4074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -3

Query: 309 LLRLAAF----IAIMQRLLRLTKFCFQFCFSYII*HAQSNCLKYRKF 181
           L+R+A++    I + + +L +  +C  +C  Y +  A S C++YR +
Sbjct: 22  LIRIASYPYRVIPVFRPVLPVLSYCVLYCVPYRVLPASSYCVQYRVY 68


>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 299

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 232 KTKLKTKLGEPQKPLHYCDEC 294
           K + K KL   Q+ LHYCD C
Sbjct: 270 KNQQKPKLPPKQQQLHYCDIC 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,599,418
Number of Sequences: 59808
Number of extensions: 287064
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)