BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0147 (586 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55 EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55 EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55 EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55 EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55 EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.55 DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.55 DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.55 AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.55 AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 25 0.55 AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 22 3.9 DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 21 8.9 DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 21 8.9 AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 8.9 >EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 6 protein. Length = 461 Score = 25.0 bits (52), Expect = 0.55 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313 RR L F N ++ PCV++S++ +LG+ + S Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222 >EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 5 protein. Length = 461 Score = 25.0 bits (52), Expect = 0.55 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313 RR L F N ++ PCV++S++ +LG+ + S Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222 >EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 4 protein. Length = 461 Score = 25.0 bits (52), Expect = 0.55 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313 RR L F N ++ PCV++S++ +LG+ + S Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222 >EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 3 protein. Length = 461 Score = 25.0 bits (52), Expect = 0.55 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313 RR L F N ++ PCV++S++ +LG+ + S Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222 >EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 2 protein. Length = 461 Score = 25.0 bits (52), Expect = 0.55 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313 RR L F N ++ PCV++S++ +LG+ + S Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222 >EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 1 protein. Length = 461 Score = 25.0 bits (52), Expect = 0.55 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313 RR L F N ++ PCV++S++ +LG+ + S Sbjct: 192 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 222 >DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 25.0 bits (52), Expect = 0.55 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313 RR L F N ++ PCV++S++ +LG+ + S Sbjct: 260 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 290 >DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 25.0 bits (52), Expect = 0.55 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313 RR L F N ++ PCV++S++ +LG+ + S Sbjct: 260 RRTLYYFFNLIV--PCVLISSMALLGFTLPPDS 290 >AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic acetylcholine receptoralpha7-1 protein. Length = 555 Score = 25.0 bits (52), Expect = 0.55 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 215 RRLL*QFHNSLLTNPCVILSALEVLGYKVVASS 313 RR L F N ++ PCV+++++ VLG+ + S Sbjct: 229 RRTLYYFFNLIV--PCVLIASMAVLGFTLPPDS 259 >AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate receptor 1 protein. Length = 953 Score = 25.0 bits (52), Expect = 0.55 Identities = 13/42 (30%), Positives = 18/42 (42%) Frame = +3 Query: 102 PYILIRGNLASYGHKNPWRVLVSGLKAEDIEELKRFACGGYC 227 P++ +R +A P +L D E K F C GYC Sbjct: 423 PFVYVR-EIAFSESCLPEEILCPHFNVTDGETTKTFCCKGYC 463 >AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1 protein. Length = 500 Score = 22.2 bits (45), Expect = 3.9 Identities = 10/37 (27%), Positives = 19/37 (51%) Frame = +1 Query: 199 SRDLRAEVTVTIPQ*STYKSLRYTECFRSFGLQSSCF 309 +RD + TV++ Q + + + FG+QS+ F Sbjct: 355 NRDFQTTPTVSVEQPHLFLYPEVSSTYTGFGIQSTDF 391 >DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex determiner protein. Length = 189 Score = 21.0 bits (42), Expect = 8.9 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -1 Query: 52 NYKCLYKQFIYKIK 11 NYK LYK +I I+ Sbjct: 112 NYKKLYKNYIINIE 125 >DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex determiner protein. Length = 189 Score = 21.0 bits (42), Expect = 8.9 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -1 Query: 52 NYKCLYKQFIYKIK 11 NYK LYK +I I+ Sbjct: 112 NYKKLYKNYIINIE 125 >AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-activated ion channel protein. Length = 632 Score = 21.0 bits (42), Expect = 8.9 Identities = 8/27 (29%), Positives = 19/27 (70%) Frame = +2 Query: 2 LVNLYFVNKLFI*TFIVQWKQIFFLSV 82 LV L +++L ++ QW++++FL++ Sbjct: 216 LVRLLRLSRLV--RYVSQWEEVYFLNM 240 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 153,580 Number of Sequences: 438 Number of extensions: 3068 Number of successful extensions: 15 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 15 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 16993167 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -