BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0145 (537 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79 SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019) 29 1.8 SB_34112| Best HMM Match : RVT_1 (HMM E-Value=0.041) 29 1.8 SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012) 29 1.8 SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2 SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2 SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 28 4.2 SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0) 28 5.6 SB_26159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6 SB_55906| Best HMM Match : SNARE (HMM E-Value=0.45) 28 5.6 SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6 SB_30796| Best HMM Match : SNARE (HMM E-Value=0.45) 28 5.6 SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3 SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41) 27 7.3 SB_6758| Best HMM Match : Spectrin (HMM E-Value=0.00075) 27 7.3 SB_52737| Best HMM Match : B_lectin (HMM E-Value=7.6) 27 7.3 SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3 SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 27 9.7 SB_12952| Best HMM Match : Peptidase_M50 (HMM E-Value=8.9e-07) 27 9.7 SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.7 >SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6406 Score = 30.7 bits (66), Expect = 0.79 Identities = 15/53 (28%), Positives = 32/53 (60%) Frame = +3 Query: 378 LRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEHRLSHV 536 + V+ TVS Q K R L+ + + DR++ TL L+ + ++++ D E+ ++ + Sbjct: 580 VEVVSTVSRAQVKMDRILNTLDARRDRLQ-TLILECQDIKVSLTDFENDMAGI 631 Score = 27.5 bits (58), Expect = 7.3 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Frame = +3 Query: 333 SSTDTNSILASIEERLRVLETVSAVQ---AKQTRRLDAIQDKLDRVETTLSLKLERVQLA 503 S TD + +A IEE L + VSAV +Q R +Q+ + + R + Sbjct: 620 SLTDFENDMAGIEEELAGMRPVSAVHDTLKEQEREFKMLQEDIRETNDLAGELISRTEQL 679 Query: 504 AEDLE 518 ED E Sbjct: 680 IEDAE 684 >SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019) Length = 1136 Score = 29.5 bits (63), Expect = 1.8 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Frame = +3 Query: 333 SSTDTNSILASIEERLRVLETVSAVQA----KQTRRLDAIQDKLDRVETTLSLKLERVQL 500 S + +S+ + + E+ LE + Q KQ + L+ ++ DR++ L ERV+ Sbjct: 110 SLQEQSSVCSELHEKCEALEAQRSSQGEAIHKQMKELEFSSEREDRIKRELEQYQERVKT 169 Query: 501 AAEDLE-HRLSHV 536 E +E R +H+ Sbjct: 170 LEESIEAERAAHL 182 >SB_34112| Best HMM Match : RVT_1 (HMM E-Value=0.041) Length = 858 Score = 29.5 bits (63), Expect = 1.8 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Frame = +3 Query: 279 RTSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAI-----Q 443 R E LR+ ++ +E R + ++ ++ VQ + R +DA+ Sbjct: 202 RIEELEAKVLRLQDEKDAGERRNKTLRKQVESRDKEIDRLN-VQLEGGRPIDAVTKDVKS 260 Query: 444 DKLDRVETTLSLKLERVQLAAEDLEHRLSH 533 D DRV L+++++ +Q A DLE RL + Sbjct: 261 DSSDRVVAHLNVQVDYLQQANRDLEKRLKN 290 >SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012) Length = 1551 Score = 29.5 bits (63), Expect = 1.8 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +3 Query: 300 YNLRVYSPNTHSSTDTNSILASIEERLRVLETVS 401 Y L + + +TH TD +ILA ++RLR T++ Sbjct: 660 YTLTLVNIHTHEITDLTAILAYPDDRLRATATIT 693 >SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1042 Score = 29.5 bits (63), Expect = 1.8 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = +3 Query: 345 TNSILASIEERLRVLE-TVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQ 497 T+ ++AS +ERL E + V+ ++ R + + DKL RVE L+ + + +Q Sbjct: 937 THKLVASFKERLAESEQNLRRVREEKEREVAELMDKLVRVENELARERQDMQ 988 >SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 539 Score = 28.3 bits (60), Expect = 4.2 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -3 Query: 190 SCYCFIGTVFLLFHRYYLTSRRFLSTCFV 104 +C CF V+LLFH + S+RF +T ++ Sbjct: 407 ACMCFWADVYLLFHPAAI-SKRFQATVYI 434 >SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 479 Score = 28.3 bits (60), Expect = 4.2 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Frame = +3 Query: 333 SSTDTNSILASIEERLRVLET----VSAVQAKQTRRLDAIQDKLD-RVETTLSLKLERVQ 497 + TDT S+ A + RVL + VS VQA+ R L+ + ++ +V +L++ + RVQ Sbjct: 403 AQTDTPSLSAMTQASTRVLRSLNIVVSRVQARVLRSLNIVVSRVQAKVLRSLNIVVSRVQ 462 >SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) Length = 328 Score = 28.3 bits (60), Expect = 4.2 Identities = 22/70 (31%), Positives = 30/70 (42%) Frame = +3 Query: 201 STCLEYPYRQGDVKCGWGVLACLCLARTSPAEPYNLRVYSPNTHSSTDTNSILASIEERL 380 ST E+ + G V C L L TSPAE V+SP+ NS+ + + Sbjct: 199 STGEEFALKDGHVLCKLHYLEAL---DTSPAERDYQEVFSPDVDGDDSPNSLKSGRHKAK 255 Query: 381 RVLETVSAVQ 410 RV T + Q Sbjct: 256 RVRTTFTEDQ 265 >SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0) Length = 839 Score = 27.9 bits (59), Expect = 5.6 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -2 Query: 197 SPFLLLFYWHCFFVISPVLFNF 132 S ++L + HCF V+ PVL N+ Sbjct: 418 STIIILGFSHCFAVVMPVLLNY 439 >SB_26159| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 281 Score = 27.9 bits (59), Expect = 5.6 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +3 Query: 336 STDTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLS---LKLERVQLAA 506 +TDT +L +++ L L+ V + LD + LDRV TL L L+RV L Sbjct: 53 ATDTQRVLLTLDRVLLTLDRVLLTLDRVLLTLDRVLLTLDRVLLTLDRVLLTLDRVLLTL 112 Query: 507 E 509 + Sbjct: 113 D 113 >SB_55906| Best HMM Match : SNARE (HMM E-Value=0.45) Length = 101 Score = 27.9 bits (59), Expect = 5.6 Identities = 12/43 (27%), Positives = 27/43 (62%) Frame = +3 Query: 348 NSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLS 476 N + I+E+ + ++T+S QTR+L+ ++ ++R+E L+ Sbjct: 38 NEVEKVIDEQEQRMKTMSVQLESQTRQLEFMKSHMERIEEKLT 80 >SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3306 Score = 27.9 bits (59), Expect = 5.6 Identities = 13/63 (20%), Positives = 30/63 (47%) Frame = +3 Query: 348 NSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEHRL 527 N +L ++++ + LE +A+ A+ +LD + ++ +R DLE++ Sbjct: 502 NGVLNTVDKHHQDLEKANAIAAELAAKLDELDGDSSGIKRIQDTANDRYDKVKRDLENKK 561 Query: 528 SHV 536 H+ Sbjct: 562 HHL 564 >SB_30796| Best HMM Match : SNARE (HMM E-Value=0.45) Length = 299 Score = 27.9 bits (59), Expect = 5.6 Identities = 12/43 (27%), Positives = 27/43 (62%) Frame = +3 Query: 348 NSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRVETTLS 476 N + I+E+ + ++T+S QTR+L+ ++ ++R+E L+ Sbjct: 236 NEVEKVIDEQEQRMKTMSVQLESQTRQLEFMKSHMERIEEKLT 278 >SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1829 Score = 27.5 bits (58), Expect = 7.3 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = +3 Query: 405 VQAKQTRRLDAIQDKLDRVETTLSLKLERVQLAAEDLEHRLSHV 536 ++A QT + D + +DR + + K+E V+ EDL ++V Sbjct: 179 IKAHQTHKYDFTSNIIDREKELIKDKIEEVKSKQEDLSQEHANV 222 >SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41) Length = 687 Score = 27.5 bits (58), Expect = 7.3 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 420 TRRLDAIQDKLDRVETTLSLKLERVQLAA 506 TR L+ +Q +D+VE L K+ +LAA Sbjct: 433 TRTLERLQKNMDKVELALDAKMPAPELAA 461 >SB_6758| Best HMM Match : Spectrin (HMM E-Value=0.00075) Length = 183 Score = 27.5 bits (58), Expect = 7.3 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Frame = +3 Query: 333 SSTDTNSILASIEERLRVLETVSAVQ---AKQTRRLDAIQDKLDRVETTLSLKLERVQLA 503 S TD + +A IEE L + VSAV +Q R +Q+ + + R + Sbjct: 12 SLTDFENDMAGIEEELAGMRPVSAVHDTLKEQEREFKMLQEDIRETNDLAGELISRTEQL 71 Query: 504 AEDLE 518 ED E Sbjct: 72 IEDAE 76 >SB_52737| Best HMM Match : B_lectin (HMM E-Value=7.6) Length = 187 Score = 27.5 bits (58), Expect = 7.3 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +3 Query: 261 ACLCLARTSPAEPYNLR 311 ACLCLAR++ AE +N R Sbjct: 39 ACLCLARSALAEDFNSR 55 >SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3259 Score = 27.5 bits (58), Expect = 7.3 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Frame = +3 Query: 285 SPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVSAVQAKQTRRLDAI-QDKLDRV 461 SP++ +L + ++ ++A IEE LE + + K++++L+ I ++ D Sbjct: 2273 SPSQEVSLPNGDGSQGATMSNGPVMACIEEHEEQLEEMQFLLDKKSKKLERITKESKDLK 2332 Query: 462 ETTLSLKLERVQLAAEDLEHRLSHV 536 E SL+ E ++L+ + E S V Sbjct: 2333 EKVTSLE-EELRLSNKQSERLTSQV 2356 >SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 961 Score = 27.1 bits (57), Expect = 9.7 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = +3 Query: 423 RRLDAIQDKLDRVETTLSLKLERVQLAAEDLEHRLS 530 R DA++ +L++V ++ERV + E+L+ R+S Sbjct: 495 REKDAVEKELEKVYQEGPCEIERVGMTFEELQKRVS 530 >SB_35649| Best HMM Match : M (HMM E-Value=6e-09) Length = 1279 Score = 27.1 bits (57), Expect = 9.7 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +3 Query: 342 DTNSILASIEERLRVLETVSAVQAKQTRRLDAIQDKLDRV-ETTLSLKLERVQL 500 D N +A IEE R L+ A QA + A+ L V ET +++ ER +L Sbjct: 245 DVNERIAGIEEEKRTLQRQVATQANER---SALHSDLSAVNETAQNIEREREEL 295 >SB_12952| Best HMM Match : Peptidase_M50 (HMM E-Value=8.9e-07) Length = 413 Score = 27.1 bits (57), Expect = 9.7 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -2 Query: 206 RRXSPFLLLFYWHCFFVISPVLFNFATVS 120 R S +L++F+W F+++ VL N+ S Sbjct: 3 RSSSIYLVIFFWTLVFIVNAVLKNYRKYS 31 >SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 594 Score = 27.1 bits (57), Expect = 9.7 Identities = 18/84 (21%), Positives = 32/84 (38%) Frame = +3 Query: 222 YRQGDVKCGWGVLACLCLARTSPAEPYNLRVYSPNTHSSTDTNSILASIEERLRVLETVS 401 Y + W C C R PAE + N D+N L++I +V + S Sbjct: 21 YNNNTQEYRWNKKYCACFKRAGPAESPCCNIEQGN--DLLDSNWTLSTINTLPKVTQKYS 78 Query: 402 AVQAKQTRRLDAIQDKLDRVETTL 473 + ++ +++ + L TL Sbjct: 79 HTDEQMGQQQESLNNSLQNKMNTL 102 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,365,483 Number of Sequences: 59808 Number of extensions: 357238 Number of successful extensions: 1057 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 968 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1056 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1215643300 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -