Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0140
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g36880.1 68418.m04418 acetyl-CoA synthetase, putative / aceta... 80 1e-15
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam... 33 0.19
At1g58360.1 68414.m06638 amino acid permease I (AAP1) identical ... 31 0.58
At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) simil... 31 0.76
At5g16370.1 68418.m01913 AMP-binding protein, putative similar t... 31 1.0
At5g16340.1 68418.m01910 AMP-binding protein, putative similar t... 31 1.0
At1g75960.1 68414.m08822 AMP-binding protein, putative similar t... 30 1.3
At1g21540.1 68414.m02694 AMP-binding protein, putative strong si... 30 1.8
At1g21530.1 68414.m02693 AMP-binding protein, putative strong si... 30 1.8
At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical ... 29 2.3
At5g45330.1 68418.m05564 expressed protein ; expression supporte... 29 2.3
At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase fam... 29 2.3
At4g14070.1 68417.m02172 AMP-binding protein, putative similar t... 29 3.1
At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase, puta... 29 3.1
At4g05160.1 68417.m00775 4-coumarate--CoA ligase, putative / 4-c... 29 3.1
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si... 29 3.1
At3g23790.1 68416.m02990 AMP-binding protein, putative similar t... 29 4.1
At1g65890.1 68414.m07477 acyl-activating enzyme 12 (AAE12) simil... 28 5.4
At1g65880.1 68414.m07476 AMP-dependent synthetase and ligase fam... 28 5.4
At1g30520.1 68414.m03734 acyl-activating enzyme 14 (AAE14) ident... 28 5.4
At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein ... 28 7.1
At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containi... 28 7.1
At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase fam... 28 7.1
At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) simil... 28 7.1
At1g64400.1 68414.m07299 long-chain-fatty-acid--CoA ligase, puta... 28 7.1
At1g01480.2 68414.m00064 1-aminocyclopropane-1-carboxylate synth... 28 7.1
At1g01480.1 68414.m00063 1-aminocyclopropane-1-carboxylate synth... 28 7.1
At5g54860.1 68418.m06834 integral membrane transporter family pr... 27 9.4
At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase / lon... 27 9.4
At1g68270.1 68414.m07798 AMP-dependent synthetase and ligase fam... 27 9.4
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon... 27 9.4
>At5g36880.1 68418.m04418 acetyl-CoA synthetase, putative /
acetate-CoA ligase, putative similar to SP|P27550
(Escherichia coli) and gi:8439651 (Homo sapiens);
contains Pfam AMP-binding enzyme domain PF00501
Length = 693
Score = 80.2 bits (189), Expect = 1e-15
Identities = 32/70 (45%), Positives = 49/70 (70%)
Frame = +3
Query: 264 VWWAASDLGWVVGHSYICYGPLLAGMTSVLYEGKPDRTPDPGQYFRIIEQHRVNALFTIP 443
V+W +D GW+ GHSY+ YGP+L G T V++EG P+ PDPG+ + I+++++V+ +T P
Sbjct: 346 VYWCTADCGWITGHSYVTYGPMLNGATVVVFEGAPN-YPDPGRCWDIVDKYKVSIFYTAP 404
Query: 444 TAFRVLKRAD 473
T R L R D
Sbjct: 405 TLVRSLMRDD 414
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 73 GRDISWDEGLEADPVPCES--VEANEPLYILYTSGTTDAPKGVQRPCG 210
GRD+ W + + P CE V+A +PL++LYTSG+T PKGV G
Sbjct: 278 GRDVWWQDVISQYPTSCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG 325
>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
protein similar to iturin A synthetase C [Bacillus
subtilis] GI:16040972; contains Pfam profile PF00501:
AMP-binding enzyme
Length = 1040
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 58 CPL---EIGRDISWDEGLEADPVPCESVEANEPLYILYTSGTTDAPKGV 195
CP+ + +S + G + PC+ + Y++YTSG+T PKGV
Sbjct: 72 CPVLLFSMDEKLSVETGCSSFVWPCKKERQRKFCYLMYTSGSTGKPKGV 120
>At1g58360.1 68414.m06638 amino acid permease I (AAP1) identical to
amino acid permease I GI:22641 from [Arabidopsis
thaliana]
Length = 485
Score = 31.5 bits (68), Expect = 0.58
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 180 RPKRSSTSLRPRSHALL-VHEKGVWSQRXVWWAASDLGWVVGHSYICYGPLLAGMTSVLY 356
R KR+ T L +H + V GV S + WA + LGW+ G S + + TS +
Sbjct: 34 REKRTGTWLTASAHIITAVIGSGVLS---LAWAIAQLGWIAGTSILLIFSFITYFTSTML 90
Query: 357 EGKPDRTPDP 386
R PDP
Sbjct: 91 -ADCYRAPDP 99
>At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) similar
to malonyl CoA synthetase GB:AAF28840 from
[Bradyrhizobium japonicum]; contains Pfam AMP-binding
enzyme domain PF00501; identical to cDNA acyl-activating
enzyme 13 (At3g16170) GI:29893232, acyl-activating
enzyme 13 [Arabidopsis thaliana] GI:29893233
Length = 544
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 109 DPVPCESVEANEPLYILYTSGTTDAPKGV 195
D E ++P I+YTSGTT PKGV
Sbjct: 160 DSFEAEGKFLDDPALIVYTSGTTGKPKGV 188
>At5g16370.1 68418.m01913 AMP-binding protein, putative similar to
AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam AMP-binding domain PF00501; identical to
cDNA adenosine monophosphate binding protein 5 AMPBP5
(AMPBP5) GI:20799718
Length = 552
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 142 EPLYILYTSGTTDAPKGV 195
+P+ + YTSGTT APKGV
Sbjct: 186 DPVVLNYTSGTTSAPKGV 203
>At5g16340.1 68418.m01910 AMP-binding protein, putative similar to
AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam AMP-binding domain PF00501; identical to
adenosine monophosphate binding protein 6 AMPBP6
(AMPBP6) GI:20799720
Length = 550
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 142 EPLYILYTSGTTDAPKGV 195
+P+ + YTSGTT APKGV
Sbjct: 186 DPVVLNYTSGTTSAPKGV 203
>At1g75960.1 68414.m08822 AMP-binding protein, putative similar to
AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam profile: PF00501 AMP-binding enzyme;
identical to cDNA adenosine monophosphate binding
protein 8 AMPBP8 (AMPBP8) GI:20799724
Length = 544
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 142 EPLYILYTSGTTDAPKGV 195
+P+ + YTSGTT +PKGV
Sbjct: 185 DPIVVNYTSGTTSSPKGV 202
>At1g21540.1 68414.m02694 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to cDNA adenosine monophosphate
binding protein 9 AMPBP9 (AMPBP9) GI:20799726
Length = 550
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 142 EPLYILYTSGTTDAPKGV 195
+P+ + YTSGTT +PKGV
Sbjct: 188 QPMILNYTSGTTSSPKGV 205
>At1g21530.1 68414.m02693 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to cDNA adenosine monophosphate
binding protein 10 AMPBP10 (AMPBP10) GI:20799728
Length = 547
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 142 EPLYILYTSGTTDAPKGV 195
+P+ + YTSGTT +PKGV
Sbjct: 185 QPMVLNYTSGTTSSPKGV 202
>At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical to
amino acid permease 6 (AAP6) [Arabidopsis thaliana]
GI:1769887
Length = 481
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 180 RPKRSSTSLRPRSHALL-VHEKGVWSQRXVWWAASDLGWVVGHSYICYGPLLAGMTSVLY 356
R KR+ T + +H + V GV S + WA + LGWV G + + + TS +
Sbjct: 30 RDKRTGTWMTGSAHIITAVIGSGVLS---LAWAIAQLGWVAGPAVLMAFSFITYFTSTML 86
Query: 357 EGKPDRTPDP 386
R+PDP
Sbjct: 87 -ADCYRSPDP 95
>At5g45330.1 68418.m05564 expressed protein ; expression supported
by MPSS
Length = 571
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 611 GQNGNQGSPDHLQPLPWVYGRSNSRGPPLXSG 706
GQ NQ P+H++ +P +G + R PPL G
Sbjct: 497 GQQHNQ-FPEHMRQVPEAFGNNFQRPPPLQPG 527
>At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to cDNA adenosine monophosphate
binding protein 2 AMPBP2 (AMPBP2) GI:20799712
Length = 603
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 142 EPLYILYTSGTTDAPKGV 195
+P+ I YTSGTT PKGV
Sbjct: 242 DPISINYTSGTTSRPKGV 259
>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
AMP-binding protein [gi:1617272] from Brassica napus;
contains Pfam AMP-binding enzyme domain PF00501;
identical to cDNA acyl-CoA synthetase-like protein
GI:20799730
Length = 727
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 130 VEANEPLYILYTSGTTDAPKGV 195
+++++ I+YTSGTT PKGV
Sbjct: 276 IDSDDTAAIMYTSGTTGNPKGV 297
>At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase,
putative / long-chain acyl-CoA synthetase, putative
similar to acyl-CoA synthetase (MF7P) gi:1617270 from
Brassica napus
Length = 666
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 85 SWDEGLEADPVPCESVEANEP---LYILYTSGTTDAPKGV 195
SWDE L+ + +P I+YTSGTT PKGV
Sbjct: 202 SWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGV 241
>At4g05160.1 68417.m00775 4-coumarate--CoA ligase, putative /
4-coumaroyl-CoA synthase, putative similar to 4CL2
[gi:12229665] from Arabidopsis thaliana, 4CL1
[gi:12229631] from Nicotiana tabacum; contains Pfam
AMP-binding enzyme domain PF00501; acyl-activating
enzyme superfamily; identical to cDNA 4-coumarate-CoA
ligase-like protein (At4g05160) GI:29893226
Length = 544
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Frame = +1
Query: 82 ISWDEGLE-ADPV---PCESVEANEPLYILYTSGTTDAPKGVQRPCGH--AATLCWSM 237
+S+D +E ++PV P ++ ++ +LY+SGTT KGV+ G+ AA+L +M
Sbjct: 167 LSFDNVMELSEPVSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTM 224
>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 545
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 145 PLYILYTSGTTDAPKGV 195
P+ + YTSGTT +PKGV
Sbjct: 187 PMVLNYTSGTTSSPKGV 203
>At3g23790.1 68416.m02990 AMP-binding protein, putative similar to
AMP-binding protein GB:CAA96521 from [Brassica napus]
(Plant Mol. Biol. (1997) 33 (5), 911-922); contains Pfam
AMP-binding enzyme domain PF00501; identical to cDNA
acyl-CoA synthetase-like protein GI:20799732
Length = 722
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 124 ESVEANEPLYILYTSGTTDAPKGV 195
E ++ ++ I+YTSGTT PKGV
Sbjct: 258 EYIDPDDIATIMYTSGTTGNPKGV 281
>At1g65890.1 68414.m07477 acyl-activating enzyme 12 (AAE12) similar
to AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam AMP-binding domain PF00501; identical to
cDNA acyl-activating enzyme 12 (At1g65890) mRNA
GI:29893228, acyl-activating enzyme 12 [Arabidopsis
thaliana] GI:29893229
Length = 578
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 133 EANEPLYILYTSGTTDAPKGV 195
+ ++P+ + YTSGTT PKGV
Sbjct: 184 DEHDPISLNYTSGTTADPKGV 204
>At1g65880.1 68414.m07476 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 580
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 133 EANEPLYILYTSGTTDAPKGV 195
+ ++P+ + YTSGTT PKGV
Sbjct: 184 DEHDPISLNYTSGTTADPKGV 204
>At1g30520.1 68414.m03734 acyl-activating enzyme 14 (AAE14)
identical to acyl-activating enzyme 14 [Arabidopsis
thaliana]; similar to SP|Q42524 4-coumarate--CoA ligase
1 (EC 6.2.1.12) (4-coumaroyl-CoA synthase 1)
{Arabidopsis thaliana}; contains Pfam profile PF00501:
AMP-binding enzyme; identical to cDNA acyl-activating
enzyme 14 (At1g30520) GI:29893263
Length = 560
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 136 ANEPLYILYTSGTTDAPKGVQRPCGHAATLCWSMKKV 246
+++ + I +TSGTT PKGV H A + S+ K+
Sbjct: 171 SDDAVVICFTSGTTGRPKGV--TISHLAFITQSLAKI 205
>At4g35280.1 68417.m05013 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 178 DAPKGVQRPCGHAATLCWSMKKVYGLNXECGGRRQTWAG 294
+APK + RPC WS K ++G + C RQ W G
Sbjct: 71 NAPK-ITRPCTECGRKFWSWKALFG-HMRCHPERQ-WRG 106
>At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containing
protein glutamine-rich tetratricopeptide repeat (TPR)
containing protein (SGT) - Rattus
norvegicus,PID:e1285298 (SP|O70593); contains Pfam
profile PF00515 TPR Domain
Length = 426
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 583 EDTFSPIALVSLVTMLSSNE 524
+D+F PI+LV+L T L +NE
Sbjct: 59 DDSFKPISLVNLFTSLDNNE 78
>At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase family
protein similar to peroxisomal-coenzyme A synthetase
(FAT2) [gi:586339] from Saccharomyces cerevisiae;
contains Pfam AMP-binding enzyme domain PF00501;
identical to cDNA; identical to cDNA adenosine
monophosphate binding protein 3 AMPBP3
(AMPBP3)GI:20799714
Length = 514
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 157 LYTSGTTDAPKGVQRPCGHAATLCWSMKKVYGL 255
L+TSGTT PKGV + A+ ++K VY L
Sbjct: 168 LHTSGTTSRPKGVPLTQLNLASSVKNIKAVYKL 200
>At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) similar
to AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam AMP-binding domain PF00501; identical to
cDNA acyl-activating enzyme 11 (At1g66120) GI:29893230,
acyl-activating enzyme 11 [Arabidopsis thaliana]
GI:29893231
Length = 572
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 139 NEPLYILYTSGTTDAPKGV 195
++P+ + YTSGTT PKGV
Sbjct: 186 HDPISLNYTSGTTADPKGV 204
>At1g64400.1 68414.m07299 long-chain-fatty-acid--CoA ligase,
putative / long-chain acyl-CoA synthetase, putative
similar to GI:1617270 (MF7P) from [Brassica napus]
Length = 665
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 85 SWDEGL---EADPVPCESVEANEPLYILYTSGTTDAPKGV 195
SWD+ L E ++ I+YTSGTT PKGV
Sbjct: 202 SWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGV 241
>At1g01480.2 68414.m00064 1-aminocyclopropane-1-carboxylate synthase
2 / ACC synthase 2 (ACS2) (ACC1) identical to
1-aminocyclopropane-1-carboxylate synthase SP|Q06402
[GI:166578] from [Arabidopsis thaliana]
Length = 390
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 76 RDISWDEGLEADPVPCES 129
RD+ W G+E PVPC S
Sbjct: 52 RDLRWRTGVEIIPVPCSS 69
>At1g01480.1 68414.m00063 1-aminocyclopropane-1-carboxylate synthase
2 / ACC synthase 2 (ACS2) (ACC1) identical to
1-aminocyclopropane-1-carboxylate synthase SP|Q06402
[GI:166578] from [Arabidopsis thaliana]
Length = 496
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 76 RDISWDEGLEADPVPCES 129
RD+ W G+E PVPC S
Sbjct: 158 RDLRWRTGVEIIPVPCSS 175
>At5g54860.1 68418.m06834 integral membrane transporter family
protein contains 10 transmembrane domains; contains Pfam
PF03092: BT1 family; contains TIGRFAMS TIGR00788:
folate/biopterin transporter; similar to high affinity
folic acid/methotrexate transporter 5 (GI:21898554)
[Leishmania tarentolae]
Length = 491
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +1
Query: 229 WSMKKVYGLNXEC---GGRRQTWAGWSVIRTFATVRSWL 336
WS+K +YG+ +C GG+++T + VI T ++ WL
Sbjct: 63 WSIKPLYGIISDCIPIGGKKRT--PYLVISTVLSLVPWL 99
>At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to
acyl-CoA synthetase (MF7P) from Brassica napus
[gi:1617270]
Length = 666
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 85 SWDEGL---EADPVPCESVEANEPLYILYTSGTTDAPKGV 195
+WDE L E + ++ I+YTSGTT PKGV
Sbjct: 202 AWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGV 241
>At1g68270.1 68414.m07798 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 535
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 142 EPLYILYTSGTTDAPKGV 195
+P+ + YTSGTT PKGV
Sbjct: 187 DPISLNYTSGTTADPKGV 204
>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to acyl
CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
Length = 665
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 154 ILYTSGTTDAPKGV 195
I+YTSGTT PKGV
Sbjct: 228 IMYTSGTTGEPKGV 241
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,017,916
Number of Sequences: 28952
Number of extensions: 425359
Number of successful extensions: 1126
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -