BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0137 (684 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 29 0.83 SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 29 0.83 SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 29 0.83 SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 29 0.83 SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 29 0.83 SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 29 0.83 SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 29 0.83 SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 29 0.83 SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 29 0.83 SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 29 0.83 SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 29 0.83 SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 27 1.9 SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 5.8 SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 5.8 SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.8 SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 26 5.8 SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 25 7.7 >SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 28.7 bits (61), Expect = 0.83 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467 T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+ Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403 Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587 L ++ R YP P +++ N + G ++ IIRE Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443 >SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosaccharomyces pombe|chr 2|||Manual Length = 1333 Score = 28.7 bits (61), Expect = 0.83 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467 T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+ Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403 Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587 L ++ R YP P +++ N + G ++ IIRE Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443 >SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 28.7 bits (61), Expect = 0.83 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467 T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+ Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403 Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587 L ++ R YP P +++ N + G ++ IIRE Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443 >SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 28.7 bits (61), Expect = 0.83 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467 T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+ Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403 Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587 L ++ R YP P +++ N + G ++ IIRE Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443 >SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 28.7 bits (61), Expect = 0.83 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467 T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+ Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403 Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587 L ++ R YP P +++ N + G ++ IIRE Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443 >SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 28.7 bits (61), Expect = 0.83 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467 T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+ Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403 Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587 L ++ R YP P +++ N + G ++ IIRE Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443 >SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 28.7 bits (61), Expect = 0.83 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467 T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+ Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403 Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587 L ++ R YP P +++ N + G ++ IIRE Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443 >SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces pombe|chr 3|||Manual Length = 1333 Score = 28.7 bits (61), Expect = 0.83 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467 T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+ Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403 Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587 L ++ R YP P +++ N + G ++ IIRE Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443 >SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizosaccharomyces pombe|chr 2|||Manual Length = 1333 Score = 28.7 bits (61), Expect = 0.83 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467 T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+ Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403 Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587 L ++ R YP P +++ N + G ++ IIRE Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443 >SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 28.7 bits (61), Expect = 0.83 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467 T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+ Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403 Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587 L ++ R YP P +++ N + G ++ IIRE Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443 >SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 28.7 bits (61), Expect = 0.83 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +3 Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467 T+ D N+ ++++ M V+ + D++ KDI+ +T+ P + L+F+ Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403 Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587 L ++ R YP P +++ N + G ++ IIRE Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443 >SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 354 Score = 27.5 bits (58), Expect = 1.9 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +3 Query: 369 SDDYGDVHIPNKDISMYVSTK 431 SDD GD+++P K + ++ TK Sbjct: 192 SDDSGDIYLPVKKVGKFIPTK 212 >SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr 3|||Manual Length = 1516 Score = 25.8 bits (54), Expect = 5.8 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -3 Query: 679 YKSIFLLAIEGILSFGSIAHKLLSR 605 Y++ FLL+ + + SF ++AH LSR Sbjct: 785 YRTRFLLSRKRVRSFQAVAHGFLSR 809 >SPBC1703.03c |||armadillo repeat protein, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 664 Score = 25.8 bits (54), Expect = 5.8 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = -2 Query: 326 DGICNW---HIFIIYSQINDIYLDYGLLISSVRLISVTSMFSVSSKGFSREVLLSELSKS 156 DGI W IN IYL + VR+ S+ ++++ GF + + S + K Sbjct: 223 DGIITWIQNSSDFALKTINQIYLYFSYPSCLVRVYSIGIIYNIYQSGFVNKKMES-VVKG 281 Query: 155 VFIFAGF 135 + +F F Sbjct: 282 ISLFDSF 288 >SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 218 Score = 25.8 bits (54), Expect = 5.8 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = +3 Query: 432 VPPILNEDLDFDNLKGKDKVCRK 500 V P+ NED++ K K+ +C+K Sbjct: 98 VYPLPNEDVEMHEAKKKENICKK 120 >SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces pombe|chr 1|||Manual Length = 510 Score = 25.8 bits (54), Expect = 5.8 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Frame = -2 Query: 311 WHIFIIYSQINDIYLDY----GLLISSVRLISVTSMFSVSSKGFSREVLLSELSKS 156 W I I+ S I+ Y GL+ + V L+ V ++SV + GF R++ L LS S Sbjct: 446 WIIIILISLFVIIFTSYCDSDGLIGNCVLLVYVDGLWSVKTNGF-RQLSLFILSFS 500 >SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe|chr 1|||Manual Length = 886 Score = 25.4 bits (53), Expect = 7.7 Identities = 14/50 (28%), Positives = 25/50 (50%) Frame = +3 Query: 234 QSHGGNQETVVQIDVIDLTINDKNVPVANAICENIVMANVTGFSVSDDYG 383 + H G+Q + V + +D V N + + + +N FS++DDYG Sbjct: 26 EEHSGSQTKNYPVVVKCIQEHDP-VDTTNVLVADDLDSNFEPFSITDDYG 74 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,778,608 Number of Sequences: 5004 Number of extensions: 57368 Number of successful extensions: 164 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 315915086 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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