SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0137
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p...    29   0.83 
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa...    29   0.83 
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...    29   0.83 
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce...    29   0.83 
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...    29   0.83 
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy...    29   0.83 
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc...    29   0.83 
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc...    29   0.83 
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    29   0.83 
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy...    29   0.83 
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos...    29   0.83 
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    27   1.9  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   5.8  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   5.8  
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.8  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    26   5.8  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   7.7  

>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +3

Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
           T+ D N+ ++++      M  V+      +  D++   KDI+   +T+  P   + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403

Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
             L  ++     R YP P  +++  N  +  G  ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443


>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +3

Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
           T+ D N+ ++++      M  V+      +  D++   KDI+   +T+  P   + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403

Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
             L  ++     R YP P  +++  N  +  G  ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +3

Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
           T+ D N+ ++++      M  V+      +  D++   KDI+   +T+  P   + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403

Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
             L  ++     R YP P  +++  N  +  G  ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443


>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +3

Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
           T+ D N+ ++++      M  V+      +  D++   KDI+   +T+  P   + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403

Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
             L  ++     R YP P  +++  N  +  G  ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +3

Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
           T+ D N+ ++++      M  V+      +  D++   KDI+   +T+  P   + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403

Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
             L  ++     R YP P  +++  N  +  G  ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443


>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +3

Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
           T+ D N+ ++++      M  V+      +  D++   KDI+   +T+  P   + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403

Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
             L  ++     R YP P  +++  N  +  G  ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443


>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +3

Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
           T+ D N+ ++++      M  V+      +  D++   KDI+   +T+  P   + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403

Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
             L  ++     R YP P  +++  N  +  G  ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443


>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +3

Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
           T+ D N+ ++++      M  V+      +  D++   KDI+   +T+  P   + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403

Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
             L  ++     R YP P  +++  N  +  G  ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +3

Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
           T+ D N+ ++++      M  V+      +  D++   KDI+   +T+  P   + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403

Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
             L  ++     R YP P  +++  N  +  G  ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443


>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +3

Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
           T+ D N+ ++++      M  V+      +  D++   KDI+   +T+  P   + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403

Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
             L  ++     R YP P  +++  N  +  G  ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443


>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +3

Query: 288 TINDKNVPVANAICENIVMANVTGFSVSDDYGDVHIPNKDISMYVSTKVPPILNEDLDFD 467
           T+ D N+ ++++      M  V+      +  D++   KDI+   +T+  P   + L+F+
Sbjct: 344 TLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFE 403

Query: 468 -NLKGKDKVCRKRRYP*PLYELKWKNSTMKAGAERTSIIRE 587
             L  ++     R YP P  +++  N  +  G  ++ IIRE
Sbjct: 404 VELTQENYRLPIRNYPLPPGKMQAMNDEINQGL-KSGIIRE 443


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 369 SDDYGDVHIPNKDISMYVSTK 431
           SDD GD+++P K +  ++ TK
Sbjct: 192 SDDSGDIYLPVKKVGKFIPTK 212


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 679 YKSIFLLAIEGILSFGSIAHKLLSR 605
           Y++ FLL+ + + SF ++AH  LSR
Sbjct: 785 YRTRFLLSRKRVRSFQAVAHGFLSR 809


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -2

Query: 326 DGICNW---HIFIIYSQINDIYLDYGLLISSVRLISVTSMFSVSSKGFSREVLLSELSKS 156
           DGI  W           IN IYL +      VR+ S+  ++++   GF  + + S + K 
Sbjct: 223 DGIITWIQNSSDFALKTINQIYLYFSYPSCLVRVYSIGIIYNIYQSGFVNKKMES-VVKG 281

Query: 155 VFIFAGF 135
           + +F  F
Sbjct: 282 ISLFDSF 288


>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 432 VPPILNEDLDFDNLKGKDKVCRK 500
           V P+ NED++    K K+ +C+K
Sbjct: 98  VYPLPNEDVEMHEAKKKENICKK 120


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 311 WHIFIIYSQINDIYLDY----GLLISSVRLISVTSMFSVSSKGFSREVLLSELSKS 156
           W I I+ S    I+  Y    GL+ + V L+ V  ++SV + GF R++ L  LS S
Sbjct: 446 WIIIILISLFVIIFTSYCDSDGLIGNCVLLVYVDGLWSVKTNGF-RQLSLFILSFS 500


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 234 QSHGGNQETVVQIDVIDLTINDKNVPVANAICENIVMANVTGFSVSDDYG 383
           + H G+Q     + V  +  +D  V   N +  + + +N   FS++DDYG
Sbjct: 26  EEHSGSQTKNYPVVVKCIQEHDP-VDTTNVLVADDLDSNFEPFSITDDYG 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,608
Number of Sequences: 5004
Number of extensions: 57368
Number of successful extensions: 164
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -