Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0134
(708 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 79 4e-15
At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3) ... 72 4e-13
At3g48350.1 68416.m05277 cysteine proteinase, putative similar t... 68 7e-12
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro... 66 2e-11
At4g23520.1 68417.m03390 cysteine proteinase, putative contains ... 64 9e-11
At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XC... 63 2e-10
At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XC... 63 2e-10
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 62 3e-10
At4g11320.1 68417.m01828 cysteine proteinase, putative contains ... 62 4e-10
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ... 62 5e-10
At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XC... 62 5e-10
At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP pr... 61 6e-10
At4g36880.1 68417.m05229 cysteine proteinase, putative strong si... 61 8e-10
At5g45890.1 68418.m05644 senescence-specific SAG12 protein (SAG1... 60 1e-09
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse... 58 4e-09
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse... 58 4e-09
At3g48340.1 68416.m05276 cysteine proteinase, putative similar t... 58 6e-09
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p... 57 1e-08
At3g45310.1 68416.m04892 cysteine proteinase, putative similar t... 54 9e-08
At3g43960.1 68416.m04706 cysteine proteinase, putative contains ... 54 1e-07
At1g06260.1 68414.m00662 cysteine proteinase, putative contains ... 54 1e-07
At4g39090.1 68417.m05535 cysteine proteinase RD19a (RD19A) / thi... 53 2e-07
At1g29080.1 68414.m03560 peptidase C1A papain family protein con... 53 2e-07
At2g34080.1 68415.m04172 cysteine proteinase, putative contains ... 52 5e-07
At2g21430.1 68415.m02550 cysteine proteinase A494, putative / th... 50 1e-06
At1g29090.1 68414.m03561 peptidase C1A papain family protein con... 50 1e-06
At3g54940.3 68416.m06091 cysteine proteinase, putative contains ... 50 2e-06
At3g54940.2 68416.m06090 cysteine proteinase, putative contains ... 50 2e-06
At2g27420.1 68415.m03314 cysteine proteinase, putative contains ... 49 3e-06
At4g16190.1 68417.m02457 cysteine proteinase, putative contains ... 48 5e-06
At1g29110.1 68414.m03563 cysteine proteinase, putative contains ... 42 3e-04
At2g22160.1 68415.m02632 cysteine endopeptidase-related similar ... 40 0.002
At3g49340.1 68416.m05394 cysteine proteinase, putative contains ... 40 0.002
At1g02305.1 68414.m00175 cathepsin B-like cysteine protease, put... 35 0.061
At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, put... 33 0.14
At3g09000.1 68416.m01053 proline-rich family protein 32 0.32
At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger) fa... 31 0.75
At3g60230.1 68416.m06731 hypothetical protein 30 1.7
At5g15950.1 68418.m01865 adenosylmethionine decarboxylase family... 29 2.3
At3g54940.1 68416.m06089 cysteine proteinase, putative contains ... 29 3.0
At1g22040.1 68414.m02757 kelch repeat-containing F-box family pr... 29 3.0
At1g11730.1 68414.m01346 galactosyltransferase family protein co... 29 3.0
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 29 4.0
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 29 4.0
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 28 5.3
At4g01610.2 68417.m00211 cathepsin B-like cysteine protease, put... 28 7.0
At1g15600.1 68414.m01875 hypothetical protein 28 7.0
At5g01280.1 68418.m00037 expressed protein 27 9.2
At4g00530.1 68417.m00073 hypothetical protein 27 9.2
At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger) fa... 27 9.2
>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
cysteine endopeptidase precursor CysEP GI:2944446 from
[Ricinus communis]
Length = 361
Score = 78.6 bits (185), Expect = 4e-15
Identities = 45/98 (45%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +2
Query: 263 KHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGA 442
KH + KH + SYKL +NK+GDM EF +T G N KH++ M G +
Sbjct: 62 KHNV-KHIHETNKKDKSYKLKLNKFGDMTSEEFRRTYAGSN--IKHHR---MFQGEKKAT 115
Query: 443 KFISPANVK-LPEQVDWRKHGAVPTFKDQGKCGSCWSF 553
K ANV LP VDWRK+GAV K+QG+CGSCW+F
Sbjct: 116 KSFMYANVNTLPTSVDWRKNGAVTPVKNQGQCGSCWAF 153
>At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3)
identical to papain-like cysteine peptidase XBCP3
GI:14600257 from [Arabidopsis thaliana]; contains Pfam
profiles PF00112: Papain family cysteine protease and
PF00396: Granulin
Length = 437
Score = 71.7 bits (168), Expect = 4e-13
Identities = 35/81 (43%), Positives = 49/81 (60%)
Frame = +2
Query: 311 SYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDW 490
+Y L +N + D+ HHEF + G + +A + + KG S+ G+ VK+P+ VDW
Sbjct: 73 TYSLSLNAFADLTHHEFKASRLGLSVSAP-SVIMASKGQSLGGS-------VKVPDSVDW 124
Query: 491 RKHGAVPTFKDQGKCGSCWSF 553
RK GAV KDQG CG+CWSF
Sbjct: 125 RKKGAVTNVKDQGSCGACWSF 145
>At3g48350.1 68416.m05277 cysteine proteinase, putative similar to
cysteine endopeptidase precursor [Ricinus communis]
GI:2944446; contains Pfam profile PF00112: Papain family
cysteine protease
Length = 364
Score = 67.7 bits (158), Expect = 7e-12
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +2
Query: 314 YKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANV-KLPEQVDW 490
YKL +N++ D+ HHEF + G N KH++ M G RG+ NV ++P VDW
Sbjct: 78 YKLKINRFADITHHEFRSSYAGSN--VKHHR---MLRGPKRGSGGFMYENVTRVPSSVDW 132
Query: 491 RKHGAVPTFKDQGKCGSCWSF 553
R+ GAV K+Q CGSCW+F
Sbjct: 133 REKGAVTEVKNQQDCGSCWAF 153
>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
protease identical to SP|P43297 Cysteine proteinase
RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
thiol protease RD21A SP:P43297 from [Arabidopsis
thaliana]
Length = 462
Score = 66.1 bits (154), Expect = 2e-11
Identities = 40/121 (33%), Positives = 64/121 (52%)
Frame = +2
Query: 191 QAAAPSQLRKRGRRQFPHEDIPEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHEFVKT 370
+A + + L ++ RR E ++ + +HN+K +SY+LG+ ++ D+ + E+
Sbjct: 59 KAQSQNSLVEKDRR---FEIFKDNLRFVDEHNEKN----LSYRLGLTRFADLTNDEYRSK 111
Query: 371 MNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHGAVPTFKDQGKCGSCWS 550
G AK K KG ++ + +LPE +DWRK GAV KDQG CGSCW+
Sbjct: 112 YLG----AKMEK----KGERRTSLRYEARVGDELPESIDWRKKGAVAEVKDQGGCGSCWA 163
Query: 551 F 553
F
Sbjct: 164 F 164
>At4g23520.1 68417.m03390 cysteine proteinase, putative contains
similarity to cysteine proteinase (thiol protease) RD21A
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 356
Score = 64.1 bits (149), Expect = 9e-11
Identities = 34/110 (30%), Positives = 55/110 (50%)
Frame = +2
Query: 224 GRRQFPHEDIPEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHEFVKTMNGFNKTAKHN 403
G ++ ++ ++ I +HN K +SY+LG+ ++ D+ E+ G K + N
Sbjct: 63 GEKERRFQNFKDNLRFIDQHNAKN----LSYQLGLTRFADLTVQEYRDLFPGSPKPKQRN 118
Query: 404 KNLYMKGGSVRGAKFISPANVKLPEQVDWRKHGAVPTFKDQGKCGSCWSF 553
+++ A +LPE VDWR+ GAV KDQG C SCW+F
Sbjct: 119 LKT--------SRRYVPLAGDQLPESVDWRQEGAVSEIKDQGTCNSCWAF 160
>At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XCP1)
identical to papain-type cysteine endopeptidase XCP1
GI:6708181 from [Arabidopsis thaliana]
Length = 288
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/81 (41%), Positives = 41/81 (50%)
Frame = +2
Query: 311 SYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDW 490
SY LG+N++ D+ H EF G K K A F LP+ VDW
Sbjct: 91 SYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQ-------PSANFRYRDITDLPKSVDW 143
Query: 491 RKHGAVPTFKDQGKCGSCWSF 553
RK GAV KDQG+CGSCW+F
Sbjct: 144 RKKGAVAPVKDQGQCGSCWAF 164
>At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XCP1)
identical to papain-type cysteine endopeptidase XCP1
GI:6708181 from [Arabidopsis thaliana]
Length = 355
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/81 (41%), Positives = 41/81 (50%)
Frame = +2
Query: 311 SYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDW 490
SY LG+N++ D+ H EF G K K A F LP+ VDW
Sbjct: 91 SYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQ-------PSANFRYRDITDLPKSVDW 143
Query: 491 RKHGAVPTFKDQGKCGSCWSF 553
RK GAV KDQG+CGSCW+F
Sbjct: 144 RKKGAVAPVKDQGQCGSCWAF 164
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 62.5 bits (145), Expect = 3e-10
Identities = 35/103 (33%), Positives = 51/103 (49%)
Frame = +2
Query: 245 EDIPEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKG 424
E ++ I +HN K +SYKLG+ ++ D+ + E+ G T + K
Sbjct: 76 EIFKDNLRFIDEHNTKN----LSYKLGLTRFADLTNEEYRSMYLGAKPTKRVLKT----- 126
Query: 425 GSVRGAKFISPANVKLPEQVDWRKHGAVPTFKDQGKCGSCWSF 553
++ + LP+ VDWRK GAV KDQG CGSCW+F
Sbjct: 127 ----SDRYQARVGDALPDSVDWRKEGAVADVKDQGSCGSCWAF 165
>At4g11320.1 68417.m01828 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 371
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +2
Query: 308 VSYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVD 487
+SY+LG+N++ D+ HE+ + +G + N +++M + ++ + LP+ VD
Sbjct: 95 LSYRLGLNRFADLSLHEYGEICHGADPRPPRN-HVFMTSSN----RYKTSDGDVLPKSVD 149
Query: 488 WRKHGAVPTFKDQGKCGSCWSF 553
WR GAV KDQG C SCW+F
Sbjct: 150 WRNEGAVTEVKDQGLCRSCWAF 171
>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 364
Score = 61.7 bits (143), Expect = 5e-10
Identities = 29/82 (35%), Positives = 47/82 (57%)
Frame = +2
Query: 308 VSYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVD 487
+SY+LG+ + D+ HE+ + +G + N +++M ++ + A+ LP+ VD
Sbjct: 88 LSYRLGLTGFADLSLHEYKEVCHGADPRPPRN-HVFMTSSD----RYKTSADDVLPKSVD 142
Query: 488 WRKHGAVPTFKDQGKCGSCWSF 553
WR GAV KDQG C SCW+F
Sbjct: 143 WRNEGAVTEVKDQGHCRSCWAF 164
>At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XCP2)
identical to papain-type cysteine endopeptidase XCP2
GI:6708183 from [Arabidopsis thaliana]
Length = 356
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/81 (40%), Positives = 45/81 (55%)
Frame = +2
Query: 311 SYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDW 490
SY LG+N++ D+ H EF K G KT ++ + A+F +P+ VDW
Sbjct: 91 SYWLGLNEFADLSHEEFKKMYLGL-KT-----DIVRRDEERSYAEFAYRDVEAVPKSVDW 144
Query: 491 RKHGAVPTFKDQGKCGSCWSF 553
RK GAV K+QG CGSCW+F
Sbjct: 145 RKKGAVAEVKNQGSCGSCWAF 165
>At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP
protein (AALP) identical to AALP protein GI:7230640 from
[Arabidopsis thaliana]; similar to barley aleurain
Length = 358
Score = 61.3 bits (142), Expect = 6e-10
Identities = 39/99 (39%), Positives = 51/99 (51%)
Frame = +2
Query: 257 EHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVR 436
E+ +I N+K GL SYKLG+N++ D+ EF +T G A N + +KG
Sbjct: 85 ENLDLIRSTNKK---GL-SYKLGVNQFADLTWQEFQRTKLG----AAQNCSATLKGSH-- 134
Query: 437 GAKFISPANVKLPEQVDWRKHGAVPTFKDQGKCGSCWSF 553
LPE DWR+ G V KDQG CGSCW+F
Sbjct: 135 -----KVTEAALPETKDWREDGIVSPVKDQGGCGSCWTF 168
>At4g36880.1 68417.m05229 cysteine proteinase, putative strong
similarity to cysteine proteinase COT44 precursor
SP:P25251 from [Brassica napus] (Rape)
Length = 376
Score = 60.9 bits (141), Expect = 8e-10
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +2
Query: 311 SYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVK-LPEQVD 487
+YKLG+ K+ D+ + E+ K G K +V K+ + N K +PE VD
Sbjct: 95 TYKLGLTKFTDLTNDEYRKLYLGARTEPARR---IAKAKNVN-QKYSAAVNGKEVPETVD 150
Query: 488 WRKHGAVPTFKDQGKCGSCWSF 553
WR+ GAV KDQG CGSCW+F
Sbjct: 151 WRQKGAVNPIKDQGTCGSCWAF 172
>At5g45890.1 68418.m05644 senescence-specific SAG12 protein (SAG12)
/ cysteine proteinase, putative identical to
senescence-specific protein SAG12 GI:1046373 from
[Arabidopsis thaliana]
Length = 346
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/81 (37%), Positives = 41/81 (50%)
Frame = +2
Query: 311 SYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDW 490
++KL +N++ D+ + EF GF + + K R S A LP VDW
Sbjct: 80 TFKLAVNQFADLTNDEFRSMYTGFKGVSALSSQSQTKMSPFRYQNVSSGA---LPVSVDW 136
Query: 491 RKHGAVPTFKDQGKCGSCWSF 553
RK GAV K+QG CG CW+F
Sbjct: 137 RKKGAVTPIKNQGSCGCCWAF 157
>At3g19400.2 68416.m02460 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 290
Score = 58.4 bits (135), Expect = 4e-09
Identities = 26/81 (32%), Positives = 46/81 (56%)
Frame = +2
Query: 311 SYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDW 490
++++G+ ++ D+ + EF + K + SV+ +++ LP++VDW
Sbjct: 85 TFEVGLTRFADLTNEEF--------RAIYLRKKMERTKDSVKTERYLYKEGDVLPDEVDW 136
Query: 491 RKHGAVPTFKDQGKCGSCWSF 553
R +GAV + KDQG CGSCW+F
Sbjct: 137 RANGAVVSVKDQGNCGSCWAF 157
>At3g19400.1 68416.m02461 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 362
Score = 58.4 bits (135), Expect = 4e-09
Identities = 26/81 (32%), Positives = 46/81 (56%)
Frame = +2
Query: 311 SYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDW 490
++++G+ ++ D+ + EF + K + SV+ +++ LP++VDW
Sbjct: 85 TFEVGLTRFADLTNEEF--------RAIYLRKKMERTKDSVKTERYLYKEGDVLPDEVDW 136
Query: 491 RKHGAVPTFKDQGKCGSCWSF 553
R +GAV + KDQG CGSCW+F
Sbjct: 137 RANGAVVSVKDQGNCGSCWAF 157
>At3g48340.1 68416.m05276 cysteine proteinase, putative similar to
cysteine endopeptidase precursor [Ricinus communis]
GI:2944446; contains Pfam profile PF00112: Papain family
cysteine protease
Length = 351
Score = 58.0 bits (134), Expect = 6e-09
Identities = 43/116 (37%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Frame = +2
Query: 197 AAPSQLRKRGRRQFPHEDIPEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHEFVKTMN 376
+ P L +R +R H H K N+ SYKL +NK+ D+ +EF
Sbjct: 46 SVPRSLNEREKRFNVFRHNVMHVHNTNKKNR-------SYKLKLNKFADLTINEFKNAYT 98
Query: 377 GFNKTAKHNKNLYMKGGSVRGAK--FISPANV-KLPEQVDWRKHGAVPTFKDQGKC 535
G N KH++ L G RG+K N+ KLP VDWRK GAV K+QGKC
Sbjct: 99 GSN--IKHHRMLQ---GPKRGSKQFMYDHENLSKLPSSVDWRKKGAVTEIKNQGKC 149
>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
protease, putative contains similarity to cysteine
proteinase RD21A (thiol protease) GI:435619, SP:P43297
from [Arabidopsis thaliana]
Length = 452
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +2
Query: 311 SYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDW 490
+Y++G+ ++ D+ + EF + + V+G K++ LP+ +DW
Sbjct: 84 TYEVGLTRFADLTNDEF--------RAIYLRSKMERTRVPVKGEKYLYKVGDSLPDAIDW 135
Query: 491 RKHGAVPTFKDQGKCGSCWSF 553
R GAV KDQG CGSCW+F
Sbjct: 136 RAKGAVNPVKDQGSCGSCWAF 156
>At3g45310.1 68416.m04892 cysteine proteinase, putative similar to
AALP protein GI:7230640 from [Arabidopsis thaliana] and
barley aleurain
Length = 358
Score = 54.0 bits (124), Expect = 9e-08
Identities = 37/99 (37%), Positives = 52/99 (52%)
Frame = +2
Query: 257 EHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVR 436
E+ +I N+K GL SYKL +N++ D+ EF + G A N + +KG
Sbjct: 85 ENLDLIRSTNKK---GL-SYKLSLNQFADLTWQEFQRYKLG----AAQNCSATLKGSHK- 135
Query: 437 GAKFISPANVKLPEQVDWRKHGAVPTFKDQGKCGSCWSF 553
I+ A V P+ DWR+ G V K+QG CGSCW+F
Sbjct: 136 ----ITEATV--PDTKDWREDGIVSPVKEQGHCGSCWTF 168
>At3g43960.1 68416.m04706 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 376
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +2
Query: 311 SYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDW 490
SY+ G+NK+ D+ EF + G K K K S ++ LP++VDW
Sbjct: 82 SYERGLNKFSDLTADEFQASYLG----GKMEK----KSLSDVAERYQYKEGDVLPDEVDW 133
Query: 491 RKHGAV-PTFKDQGKCGSCWSF 553
R+ GAV P K QG+CGSCW+F
Sbjct: 134 RERGAVVPRVKRQGECGSCWAF 155
>At1g06260.1 68414.m00662 cysteine proteinase, putative contains
similarity to thiol-protease, pre-pro-TPE4A protein
GI:3688528 [Pisum sativum]
Length = 343
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/80 (37%), Positives = 42/80 (52%)
Frame = +2
Query: 314 YKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWR 493
+KL N++ DM + EF G N ++ L+ K V PA +P+ VDWR
Sbjct: 84 FKLTDNRFADMTNSEFKAHFLGLNTSSLR---LHKKQRPV-----CDPAG-NVPDAVDWR 134
Query: 494 KHGAVPTFKDQGKCGSCWSF 553
GAV ++QGKCG CW+F
Sbjct: 135 TQGAVTPIRNQGKCGGCWAF 154
>At4g39090.1 68417.m05535 cysteine proteinase RD19a (RD19A) / thiol
protease identical to cysteine proteinase RD19a, thiol
protease SP:P43296, GI:435618 from [Arabidopsis
thaliana]
Length = 368
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/77 (38%), Positives = 37/77 (48%)
Frame = +2
Query: 323 GMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHG 502
G+ ++ D+ EF K G K K+ A + N LPE DWR HG
Sbjct: 95 GVTQFSDLTRSEFRKKHLGVRSGFKLPKD-------ANKAPILPTEN--LPEDFDWRDHG 145
Query: 503 AVPTFKDQGKCGSCWSF 553
AV K+QG CGSCWSF
Sbjct: 146 AVTPVKNQGSCGSCWSF 162
>At1g29080.1 68414.m03560 peptidase C1A papain family protein
contains similarity to cysteine protease SPCP1
GI:13491750 from [Ipomoea batatas]; contains Pfam
profile PF00112: Papain family cysteine protease
Length = 346
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/85 (35%), Positives = 43/85 (50%)
Frame = +2
Query: 299 MGLVSYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPE 478
MG SYKLG+N++ D EF+ T G + + + + A + ++V L
Sbjct: 76 MGNQSYKLGVNEFTDWTKEEFLATYTGLRGV--NVTSPFEVVNETKPAWNWTVSDV-LGT 132
Query: 479 QVDWRKHGAVPTFKDQGKCGSCWSF 553
DWR GAV K QG+CG CW+F
Sbjct: 133 NKDWRNEGAVTPVKSQGECGGCWAF 157
>At2g34080.1 68415.m04172 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 345
Score = 51.6 bits (118), Expect = 5e-07
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Frame = +2
Query: 209 QLRKRGRRQFPHEDIPEHKHIIAKHNQKY-----EMGLVSYKLGMNKYGDMLHHEFVKTM 373
Q R R++ E + + K N K+ + G SYKLG+N++ D + EF+
Sbjct: 41 QWMARFSREYRDELEKNMRRDVFKKNLKFIENFNKKGNKSYKLGVNEFADWTNEEFLAIH 100
Query: 374 NGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQV----DWRKHGAVPTFKDQGKCGS 541
G K L S AK IS + + V DWR GAV K QG+CG
Sbjct: 101 TGL-------KGLTEVSPSKVVAKTISSQTWNVSDMVVESKDWRAEGAVTPVKYQGQCGC 153
Query: 542 CWSF 553
CW+F
Sbjct: 154 CWAF 157
>At2g21430.1 68415.m02550 cysteine proteinase A494, putative / thiol
protease, putative identical to SP:P43295 Probable
cysteine proteinase A494 precursor [Arabidopsis
thaliana]; strong similarity to cysteine proteinase
RD19A (thiol protease) GI:435618, SP:P43296 from
[Arabidopsis thaliana]
Length = 361
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = +2
Query: 470 LPEQVDWRKHGAVPTFKDQGKCGSCWSF 553
LPE+ DWR GAV K+QG CGSCWSF
Sbjct: 132 LPEEFDWRDRGAVTPVKNQGSCGSCWSF 159
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 565 GALEGQHFRQSGYLVSLLRSKTFIDC 642
GALEG HF +G LVS L + +DC
Sbjct: 163 GALEGAHFLATGKLVS-LSEQQLVDC 187
>At1g29090.1 68414.m03561 peptidase C1A papain family protein
contains similarity to cysteine protease SPCP1
GI:13491750 from [Ipomoea batatas]; contains Pfam
profile PF00112: Papain family cysteine protease
Length = 355
Score = 50.4 bits (115), Expect = 1e-06
Identities = 32/108 (29%), Positives = 52/108 (48%)
Frame = +2
Query: 230 RQFPHEDIPEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKN 409
+Q + ++ I K N+K G +YKLG+N++ D EF+ T G +
Sbjct: 64 KQMRFDVFKKNLKFIEKFNKK---GDRTYKLGVNEFADWTREEFIATHTGLKGVNGIPSS 120
Query: 410 LYMKGGSVRGAKFISPANVKLPEQVDWRKHGAVPTFKDQGKCGSCWSF 553
++ + + + ++V E DWR GAV K QG+CG CW+F
Sbjct: 121 EFVD--EMIPSWNWNVSDVAGRETKDWRYEGAVTPVKYQGQCGCCWAF 166
>At3g54940.3 68416.m06091 cysteine proteinase, putative contains
similarity to cysteine proteinase GI:479060 from
[Glycine max]
Length = 368
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = +2
Query: 323 GMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHG 502
G+ ++ D+ EF + G +GG+V GA+ LPE DWR+ G
Sbjct: 95 GVTQFSDLTEEEFKRMYTGVADVGGS------RGGTV-GAEAPMVEVDGLPEDFDWREKG 147
Query: 503 AVPTFKDQGKCGSCWSF 553
V K+QG CGSCW+F
Sbjct: 148 GVTEVKNQGACGSCWAF 164
>At3g54940.2 68416.m06090 cysteine proteinase, putative contains
similarity to cysteine proteinase GI:479060 from
[Glycine max]
Length = 211
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = +2
Query: 323 GMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHG 502
G+ ++ D+ EF + G +GG+V GA+ LPE DWR+ G
Sbjct: 95 GVTQFSDLTEEEFKRMYTGVADVGGS------RGGTV-GAEAPMVEVDGLPEDFDWREKG 147
Query: 503 AVPTFKDQGKCGSCWSF 553
V K+QG CGSCW+F
Sbjct: 148 GVTEVKNQGACGSCWAF 164
>At2g27420.1 68415.m03314 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 348
Score = 49.2 bits (112), Expect = 3e-06
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Frame = +2
Query: 209 QLRKRGRRQFPHEDIPEHKHIIAKHN----QKYEMG-LVSYKLGMNKYGDMLHHEFVKTM 373
Q R R + E ++ I K N Q + M ++YK+ +N++ D+ EF T
Sbjct: 37 QWMARFNRVYSDETEKRNRFNIFKKNLEFVQNFNMNNKITYKVDINEFSDLTDEEFRATH 96
Query: 374 NGFNKTAKHNKNLYMKGGSVRGAKFISPANVK-LPEQVDWRKHGAVPTFKDQGKCGSCWS 550
G + + G + NV E +DWR+ GAV K QG+CG CW+
Sbjct: 97 TGLVVPEAITRISTLSSG--KNTVPFRYGNVSDNGESMDWRQEGAVTPVKYQGRCGGCWA 154
Query: 551 F 553
F
Sbjct: 155 F 155
>At4g16190.1 68417.m02457 cysteine proteinase, putative contains
similarity to papain-like cysteine proteinase isoform I
GI:7381219 from [Ipomoea batatas]
Length = 373
Score = 48.4 bits (110), Expect = 5e-06
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 470 LPEQVDWRKHGAVPTFKDQGKCGSCWSF 553
LP + DWR+ GAV K+QG CGSCWSF
Sbjct: 140 LPTEFDWREQGAVTPVKNQGMCGSCWSF 167
>At1g29110.1 68414.m03563 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 334
Score = 42.3 bits (95), Expect = 3e-04
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Frame = +2
Query: 230 RQFPHEDIPEHKHIIAKHNQKY-----EMGLVSYKLGMNKYGDMLHHEFVKTMNGFNKTA 394
R + E E + + K N K+ MG SY LG+N++ D EF+ T G
Sbjct: 47 RVYKDESEKEMRLKVFKKNLKFIENFNNMGNQSYTLGVNEFTDWKTEEFLATHTGLRVNV 106
Query: 395 KHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHGAVPTFKDQGKC 535
L+ K R +S +++ E DWR GAV K QG C
Sbjct: 107 TSLSELFNKTKPSRNWN-MSDIDME-DESKDWRDEGAVTPVKYQGAC 151
>At2g22160.1 68415.m02632 cysteine endopeptidase-related similar to
cysteine endopeptidase precursor GI:2944446 from
[Ricinus communis]
Length = 105
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/72 (34%), Positives = 35/72 (48%)
Frame = +2
Query: 314 YKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWR 493
YKL +NK+ ++ EFV F+ + H K L K F + P+ +DWR
Sbjct: 35 YKLKLNKFANLTDVEFVNAHTCFDMS-DHKKILDSK-------PFFYENMTQAPDSLDWR 86
Query: 494 KHGAVPTFKDQG 529
+ GAV KDQG
Sbjct: 87 EKGAVTNVKDQG 98
>At3g49340.1 68416.m05394 cysteine proteinase, putative contains
PS00640: Eukaryotic thiol (cysteine) proteases
asparagine active site; similar to cysteine proteinase
GI:535454 from [Alnus glutinosam]
Length = 341
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/81 (27%), Positives = 33/81 (40%)
Frame = +2
Query: 311 SYKLGMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDW 490
+Y L +N++ D+ EF G S F + E +DW
Sbjct: 76 TYTLDVNEFSDLTDEEFKARYTGL--VVPEGMTRISTTDSHETVSFRYENVGETGESMDW 133
Query: 491 RKHGAVPTFKDQGKCGSCWSF 553
+ GAV + K Q +CG CW+F
Sbjct: 134 IQEGAVTSVKHQQQCGCCWAF 154
>At1g02305.1 68414.m00175 cathepsin B-like cysteine protease,
putative similar to cathepsin B-like cysteine proteinase
[Nicotiana rustica] GI:609175; contains Pfam profile
PF00112: Papain family cysteine protease
Length = 362
Score = 34.7 bits (76), Expect = 0.061
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = +2
Query: 461 NVKLPEQVD----WRKHGAVPTFKDQGKCGSCWSF 553
++KLP++ D W + ++ DQG CGSCW+F
Sbjct: 103 SLKLPKEFDARTAWSQCTSIGRILDQGHCGSCWAF 137
>At4g01610.1 68417.m00210 cathepsin B-like cysteine protease,
putative similar to cathepsin B-like cysteine proteinase
GI:609175 from [Nicotiana rustica]; contains an
unusually short, 5nt exon
Length = 359
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +2
Query: 461 NVKLPEQVD----WRKHGAVPTFKDQGKCGSCWSF 553
++KLP+ D W + ++ DQG CGSCW+F
Sbjct: 100 SLKLPKAFDARTAWPQCTSIGNILDQGHCGSCWAF 134
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 32.3 bits (70), Expect = 0.32
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 429 ASAGLSSYRRPT*SCRSRWTGGSTAPSRHSRTKGSVAHAGPFSTTGSFGRTALPSVR--- 599
+S+ ++ RRP+ S SR T P+R S T + + + P +T S R++ P+ R
Sbjct: 137 SSSSVAGLRRPSSSGSSRSTSRPATPTRRSTTP-TTSTSRPVTTRASNSRSSTPTSRATL 195
Query: 600 LPGVASSEQNLHRLLGSSYGEQRAAT 677
A++ R +S G R+AT
Sbjct: 196 TAARATTSTAAPRTTTTSSGSARSAT 221
>At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 434 GRSHPSCTDSCCVWQFCXXXXXXXRTRGGACLRTCSCPACKK 309
G + C +C W FC R G+ LR C CP C++
Sbjct: 15 GHFNAPCQSNCSHW-FCGNCIMLVW-RHGSTLRPCKCPLCRR 54
>At3g60230.1 68416.m06731 hypothetical protein
Length = 207
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 495 STAPSRHSRTKGSVAHAGPFSTTGSFGRTALPSVRLP 605
+ P+ HSR++G GP + T SF R P + P
Sbjct: 93 NNGPNAHSRSQGEPGVGGPTNPTESFNRNTGPIPKAP 129
>At5g15950.1 68418.m01865 adenosylmethionine decarboxylase family
protein contains Pfam profile: PF01536
adenosylmethionine decarboxylase
Length = 362
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = +2
Query: 224 GRRQFPHEDIPEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHEFVKTMNGFNKTAKHN 403
G + FPH + E ++ H K + V+Y +G + H + N NK +
Sbjct: 120 GGQPFPHRNFSEEVSVLDGHFAKLGLSSVAYLMGNDDETKKWHVYSASSANSNNKNNVYT 179
Query: 404 KNLYMKG 424
+ M G
Sbjct: 180 LEMCMTG 186
>At3g54940.1 68416.m06089 cysteine proteinase, putative contains
similarity to cysteine proteinase GI:479060 from
[Glycine max]
Length = 166
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 323 GMNKYGDMLHHEFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRKHG 502
G+ ++ D+ EF + G +GG+V GA+ LPE DWR+ G
Sbjct: 95 GVTQFSDLTEEEFKRMYTGVADVGGS------RGGTV-GAEAPMVEVDGLPEDFDWREKG 147
Query: 503 AVPTFKDQ 526
V K+Q
Sbjct: 148 GVTEVKNQ 155
>At1g22040.1 68414.m02757 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 475
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 380 FNKTAKHNKNLYMKGGSVRGAKFISP---ANVKLPEQVDWRKHGAVPTFKDQ 526
++KT NK LY+ GG RG +SP A V P W + ++P K Q
Sbjct: 220 YSKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQ 271
>At1g11730.1 68414.m01346 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 384
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 471 SFTLAGDMNLAPRTLPPFMYRFLLCLAVLLKPFIVFTNSWWSMSP 337
SF GD N PR + F +CLA + FTN W++ P
Sbjct: 2 SFKNRGDYNFTPRNVVSRNSVFFMCLASFCLG-MFFTNRMWNIVP 45
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related protein
HARP [Homo sapiens] GI:6693791; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF01844: HNH endonuclease
Length = 1190
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/107 (23%), Positives = 45/107 (42%)
Frame = +2
Query: 176 RVECLQAAAPSQLRKRGRRQFPHEDIPEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHH 355
R E ++A+ PSQ + + D P H I + ++++ K + G L
Sbjct: 853 RPEEIEASNPSQGTTKEKNPESITDDPVHVLAILEFMKEWKSLRPIEKRKL--LGKPLQL 910
Query: 356 EFVKTMNGFNKTAKHNKNLYMKGGSVRGAKFISPANVKLPEQVDWRK 496
++ +++ HN ++GGS R S ++ LPE W K
Sbjct: 911 PLSLELSYLSESTSHNSEGLLRGGSKRRNTPFSEISIPLPENAVWIK 957
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +1
Query: 274 RQTQPEVRNGPRFLQA---GHEQVRRHAPPRVREDYERLQQNCQTQQESVHEGWER 432
+Q QP+ P++LQ+ + V+R P ++++ ++LQQ Q QQ+ + W R
Sbjct: 48 QQPQPQP---PQYLQSQSDAQQYVQRGYPQQIQQQ-QQLQQQQQQQQQQQEQQWSR 99
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 94 GYLCYECGLSYTYF*CKNEIQQLSQ 20
GYLCY CGL + C E+Q+++Q
Sbjct: 152 GYLCYRCGLR-IHEKCVVELQEITQ 175
>At4g01610.2 68417.m00211 cathepsin B-like cysteine protease,
putative similar to cathepsin B-like cysteine proteinase
GI:609175 from [Nicotiana rustica]; contains an
unusually short, 5nt exon
Length = 359
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +2
Query: 461 NVKLPEQVD----WRKHGAVPTFKDQGKCGSCWSF 553
++KLP+ D W + ++ G CGSCW+F
Sbjct: 100 SLKLPKAFDARTAWPQCTSIGNILGLGHCGSCWAF 134
>At1g15600.1 68414.m01875 hypothetical protein
Length = 220
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 351 WSMSPYLFMPSL*ETRPISYFWLCLAMM 268
W +S F S + YFWLCLA++
Sbjct: 141 WILSSKAFDSSALDDTTTQYFWLCLALL 168
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 429 ASAGLSSYRRPT*SCRSRWTGGSTAPSRHSRTKGSVAHAGPFSTTGSFGRTALPS 593
+S+ +S RRP+ S SR T P+R S+T T + R L S
Sbjct: 75 SSSSVSGIRRPSSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATSTTTRATLTS 129
>At4g00530.1 68417.m00073 hypothetical protein
Length = 94
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 468 FTLAGDMNLAPRTLPPFMYRFLLCLAVLLKPFIVFTNSWWSMSPYLFM 325
F L GD P L P++ ++ L L++ ++ S+W + +LFM
Sbjct: 10 FLLTGDYGPEPNVLDPYLSSSMILL--LVEVLVIRMFSYWWVMLHLFM 55
>At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 416 CTDSCCVWQFCXXXXXXXRTRGGACLRTCSCPACKK 309
C +C W FC R G+ L+ C CP C++
Sbjct: 21 CQANCSHW-FCGNCIMLVW-RHGSTLQPCKCPLCRR 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,421,726
Number of Sequences: 28952
Number of extensions: 335742
Number of successful extensions: 1214
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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