BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0101 (685 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 28 1.4 SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 27 2.5 SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 26 4.4 SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra... 26 4.4 SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 4.4 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 5.8 SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 7.7 SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 7.7 >SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Sum3|Schizosaccharomyces pombe|chr 3|||Manual Length = 636 Score = 27.9 bits (59), Expect = 1.4 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = +2 Query: 386 RSYHYLLSASYFNNYQTNREGFAKSSGNYRTIRG 487 R HY NNY+ REG + G YR RG Sbjct: 79 RGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRG 112 >SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1098 Score = 27.1 bits (57), Expect = 2.5 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +1 Query: 115 KAVLSTYVKRTCYFFENS 168 KAV YV+R CY+ EN+ Sbjct: 271 KAVFDKYVERECYYSENA 288 >SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 497 Score = 26.2 bits (55), Expect = 4.4 Identities = 18/64 (28%), Positives = 28/64 (43%) Frame = +1 Query: 307 QRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIREVFRKLSDDSW 486 +R+ R P SE G S T F + L+++PD+QG I L +S+ Sbjct: 20 RRLSRSSTITPSVSEYRSGFSKTAFGN--------IELEEIPDKQGNITRATSNLESNSY 71 Query: 487 EKTI 498 K + Sbjct: 72 PKAL 75 >SPBC1289.09 |tim21||mitochondrial inner membrane presequence translocase complex subunit Tim21 |Schizosaccharomyces pombe|chr 2|||Manual Length = 223 Score = 26.2 bits (55), Expect = 4.4 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +1 Query: 313 VLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIREVFRKLSDDSWE 489 ++R IQ Q T S V L+ L Q+ P E+GR+ +F+ S+ +W+ Sbjct: 1 MIRTIQRQ----SATRFSSALVQRRLYSLASDSLNKQRKPQEEGRLARIFKDPSNKAWK 55 >SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces pombe|chr 2|||Manual Length = 330 Score = 26.2 bits (55), Expect = 4.4 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +1 Query: 430 PDEQGRIREVFRKLSDDSWEKTIGLISTSLRGV 528 PD + E+ + L SW+ L+STS +G+ Sbjct: 41 PDSLNDLSEISKNLYISSWKTASELVSTSDKGI 73 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 25.8 bits (54), Expect = 5.8 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +2 Query: 170 H*INRIKYEGVCSHRCL-SGSGCAGRGRLSYQNVDQGC 280 H I+R++ +GVC RCL + A + Y ++ GC Sbjct: 446 HAISRVEAQGVCVDRCLFQLASLAYEFLVRYGYINYGC 483 >SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr 1|||Manual Length = 330 Score = 25.4 bits (53), Expect = 7.7 Identities = 17/48 (35%), Positives = 20/48 (41%) Frame = +3 Query: 33 NYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK 176 NYN+ C H D L +A CA CK + H EF TK Sbjct: 16 NYNIWIDCDPGHDDVVALTLAACAGHCK--ILGVSTVHGNTTLEFTTK 61 >SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosaccharomyces pombe|chr 2|||Manual Length = 803 Score = 25.4 bits (53), Expect = 7.7 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -1 Query: 268 DVLIAESSSASTPRARQATM 209 D+L+A+ S+ TP++R A M Sbjct: 657 DILVADPSTTVTPKSRDAVM 676 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,678,613 Number of Sequences: 5004 Number of extensions: 53439 Number of successful extensions: 142 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 142 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 315915086 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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