BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0101 (685 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U40622-1|AAC50339.1| 334|Homo sapiens XRCC4 protein. 33 1.3 BT007216-1|AAP35880.1| 310|Homo sapiens X-ray repair complement... 33 1.3 BC016314-1|AAH16314.1| 336|Homo sapiens X-ray repair complement... 33 1.3 BC005259-1|AAH05259.1| 310|Homo sapiens XRCC4 protein protein. 33 1.3 AY940097-1|AAX14046.1| 334|Homo sapiens X-ray repair complement... 33 1.3 AF055285-2|AAD47297.1| 334|Homo sapiens DNA repair protein XRCC... 33 1.3 AF055285-1|AAD47298.1| 336|Homo sapiens DNA repair protein XRCC... 33 1.3 AB017445-1|BAB20668.1| 336|Homo sapiens XRCC4 protein. 33 1.3 L07868-1|AAB59446.1| 1308|Homo sapiens receptor tyrosine kinase ... 30 6.7 BC112199-1|AAI12200.1| 1308|Homo sapiens v-erb-a erythroblastic ... 30 6.7 AK128666-1|BAC87560.1| 167|Homo sapiens protein ( Homo sapiens ... 30 6.7 AC105921-1|AAY24303.1| 552|Homo sapiens unknown protein. 30 6.7 AB209697-1|BAD92934.1| 892|Homo sapiens v-erb-a erythroblastic ... 30 6.7 >U40622-1|AAC50339.1| 334|Homo sapiens XRCC4 protein. Length = 334 Score = 32.7 bits (71), Expect = 1.3 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +1 Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630 SWEKT+ G + T G WT V+ + + +E G +G L KAL Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74 >BT007216-1|AAP35880.1| 310|Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 protein. Length = 310 Score = 32.7 bits (71), Expect = 1.3 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +1 Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630 SWEKT+ G + T G WT V+ + + +E G +G L KAL Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74 >BC016314-1|AAH16314.1| 336|Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 protein. Length = 336 Score = 32.7 bits (71), Expect = 1.3 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +1 Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630 SWEKT+ G + T G WT V+ + + +E G +G L KAL Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74 >BC005259-1|AAH05259.1| 310|Homo sapiens XRCC4 protein protein. Length = 310 Score = 32.7 bits (71), Expect = 1.3 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +1 Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630 SWEKT+ G + T G WT V+ + + +E G +G L KAL Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74 >AY940097-1|AAX14046.1| 334|Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 protein. Length = 334 Score = 32.7 bits (71), Expect = 1.3 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +1 Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630 SWEKT+ G + T G WT V+ + + +E G +G L KAL Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74 >AF055285-2|AAD47297.1| 334|Homo sapiens DNA repair protein XRCC4 protein. Length = 334 Score = 32.7 bits (71), Expect = 1.3 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +1 Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630 SWEKT+ G + T G WT V+ + + +E G +G L KAL Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74 >AF055285-1|AAD47298.1| 336|Homo sapiens DNA repair protein XRCC4 protein. Length = 336 Score = 32.7 bits (71), Expect = 1.3 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +1 Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630 SWEKT+ G + T G WT V+ + + +E G +G L KAL Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74 >AB017445-1|BAB20668.1| 336|Homo sapiens XRCC4 protein. Length = 336 Score = 32.7 bits (71), Expect = 1.3 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +1 Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630 SWEKT+ G + T G WT V+ + + +E G +G L KAL Sbjct: 23 SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74 >L07868-1|AAB59446.1| 1308|Homo sapiens receptor tyrosine kinase protein. Length = 1308 Score = 30.3 bits (65), Expect = 6.7 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%) Frame = +2 Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277 + HT N +FS I I NR EG VC+H C S GC G G + + Sbjct: 468 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 526 Query: 278 CRRTLSLPHCSAYYGQFKD 334 R + + C+ Y G+F++ Sbjct: 527 SRGRICIESCNLYDGEFRE 545 >BC112199-1|AAI12200.1| 1308|Homo sapiens v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) protein. Length = 1308 Score = 30.3 bits (65), Expect = 6.7 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%) Frame = +2 Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277 + HT N +FS I I NR EG VC+H C S GC G G + + Sbjct: 468 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 526 Query: 278 CRRTLSLPHCSAYYGQFKD 334 R + + C+ Y G+F++ Sbjct: 527 SRGRICIESCNLYDGEFRE 545 >AK128666-1|BAC87560.1| 167|Homo sapiens protein ( Homo sapiens cDNA FLJ46826 fis, clone UTERU2014998. ). Length = 167 Score = 30.3 bits (65), Expect = 6.7 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +1 Query: 169 PLNKSHQI*RCMLSSLPVWLWVCWPRKTQLSERRPRMQTDFKSAALQRVLRPIQ 330 P+ Q C +S P+W+W+C P + ++ RPR+ SA+ +V+ P Q Sbjct: 35 PMTIRKQNGSCPSTSCPLWVWLCHPSWSAVA--RPRLAA--ASASWAQVILPPQ 84 >AC105921-1|AAY24303.1| 552|Homo sapiens unknown protein. Length = 552 Score = 30.3 bits (65), Expect = 6.7 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%) Frame = +2 Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277 + HT N +FS I I NR EG VC+H C S GC G G + + Sbjct: 327 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 385 Query: 278 CRRTLSLPHCSAYYGQFKD 334 R + + C+ Y G+F++ Sbjct: 386 SRGRICIESCNLYDGEFRE 404 >AB209697-1|BAD92934.1| 892|Homo sapiens v-erb-a erythroblastic leukemia viral oncogene homolog 4 variant protein. Length = 892 Score = 30.3 bits (65), Expect = 6.7 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%) Frame = +2 Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277 + HT N +FS I I NR EG VC+H C S GC G G + + Sbjct: 68 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 126 Query: 278 CRRTLSLPHCSAYYGQFKD 334 R + + C+ Y G+F++ Sbjct: 127 SRGRICIESCNLYDGEFRE 145 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 93,430,443 Number of Sequences: 237096 Number of extensions: 1985179 Number of successful extensions: 3784 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3730 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3784 length of database: 76,859,062 effective HSP length: 88 effective length of database: 55,994,614 effective search space used: 7783251346 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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