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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0101
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40622-1|AAC50339.1|  334|Homo sapiens XRCC4 protein.                  33   1.3  
BT007216-1|AAP35880.1|  310|Homo sapiens X-ray repair complement...    33   1.3  
BC016314-1|AAH16314.1|  336|Homo sapiens X-ray repair complement...    33   1.3  
BC005259-1|AAH05259.1|  310|Homo sapiens XRCC4 protein protein.        33   1.3  
AY940097-1|AAX14046.1|  334|Homo sapiens X-ray repair complement...    33   1.3  
AF055285-2|AAD47297.1|  334|Homo sapiens DNA repair protein XRCC...    33   1.3  
AF055285-1|AAD47298.1|  336|Homo sapiens DNA repair protein XRCC...    33   1.3  
AB017445-1|BAB20668.1|  336|Homo sapiens XRCC4 protein.                33   1.3  
L07868-1|AAB59446.1| 1308|Homo sapiens receptor tyrosine kinase ...    30   6.7  
BC112199-1|AAI12200.1| 1308|Homo sapiens v-erb-a erythroblastic ...    30   6.7  
AK128666-1|BAC87560.1|  167|Homo sapiens protein ( Homo sapiens ...    30   6.7  
AC105921-1|AAY24303.1|  552|Homo sapiens unknown protein.              30   6.7  
AB209697-1|BAD92934.1|  892|Homo sapiens v-erb-a erythroblastic ...    30   6.7  

>U40622-1|AAC50339.1|  334|Homo sapiens XRCC4 protein.
          Length = 334

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
           SWEKT+  G + T   G   WT  V+      +  +  +E G  +G L KAL
Sbjct: 23  SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74


>BT007216-1|AAP35880.1|  310|Homo sapiens X-ray repair complementing
           defective repair in Chinese hamster cells 4 protein.
          Length = 310

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
           SWEKT+  G + T   G   WT  V+      +  +  +E G  +G L KAL
Sbjct: 23  SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74


>BC016314-1|AAH16314.1|  336|Homo sapiens X-ray repair complementing
           defective repair in Chinese hamster cells 4 protein.
          Length = 336

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
           SWEKT+  G + T   G   WT  V+      +  +  +E G  +G L KAL
Sbjct: 23  SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74


>BC005259-1|AAH05259.1|  310|Homo sapiens XRCC4 protein protein.
          Length = 310

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
           SWEKT+  G + T   G   WT  V+      +  +  +E G  +G L KAL
Sbjct: 23  SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74


>AY940097-1|AAX14046.1|  334|Homo sapiens X-ray repair complementing
           defective repair in Chinese hamster cells 4 protein.
          Length = 334

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
           SWEKT+  G + T   G   WT  V+      +  +  +E G  +G L KAL
Sbjct: 23  SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74


>AF055285-2|AAD47297.1|  334|Homo sapiens DNA repair protein XRCC4
           protein.
          Length = 334

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
           SWEKT+  G + T   G   WT  V+      +  +  +E G  +G L KAL
Sbjct: 23  SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74


>AF055285-1|AAD47298.1|  336|Homo sapiens DNA repair protein XRCC4
           protein.
          Length = 336

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
           SWEKT+  G + T   G   WT  V+      +  +  +E G  +G L KAL
Sbjct: 23  SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74


>AB017445-1|BAB20668.1|  336|Homo sapiens XRCC4 protein.
          Length = 336

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 481 SWEKTI--GLISTSLRGVGRWTSRVTPH*KGDKGSNYTVEVGHEIGALAKAL 630
           SWEKT+  G + T   G   WT  V+      +  +  +E G  +G L KAL
Sbjct: 23  SWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74


>L07868-1|AAB59446.1| 1308|Homo sapiens receptor tyrosine kinase
           protein.
          Length = 1308

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
 Frame = +2

Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277
           + HT N   +FS I   I    NR       EG VC+H C S  GC G G     +  + 
Sbjct: 468 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 526

Query: 278 CRRTLSLPHCSAYYGQFKD 334
            R  + +  C+ Y G+F++
Sbjct: 527 SRGRICIESCNLYDGEFRE 545


>BC112199-1|AAI12200.1| 1308|Homo sapiens v-erb-a erythroblastic
           leukemia viral oncogene homolog 4 (avian) protein.
          Length = 1308

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
 Frame = +2

Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277
           + HT N   +FS I   I    NR       EG VC+H C S  GC G G     +  + 
Sbjct: 468 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 526

Query: 278 CRRTLSLPHCSAYYGQFKD 334
            R  + +  C+ Y G+F++
Sbjct: 527 SRGRICIESCNLYDGEFRE 545


>AK128666-1|BAC87560.1|  167|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46826 fis, clone UTERU2014998. ).
          Length = 167

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 169 PLNKSHQI*RCMLSSLPVWLWVCWPRKTQLSERRPRMQTDFKSAALQRVLRPIQ 330
           P+    Q   C  +S P+W+W+C P  + ++  RPR+     SA+  +V+ P Q
Sbjct: 35  PMTIRKQNGSCPSTSCPLWVWLCHPSWSAVA--RPRLAA--ASASWAQVILPPQ 84


>AC105921-1|AAY24303.1|  552|Homo sapiens unknown protein.
          Length = 552

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
 Frame = +2

Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277
           + HT N   +FS I   I    NR       EG VC+H C S  GC G G     +  + 
Sbjct: 327 YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 385

Query: 278 CRRTLSLPHCSAYYGQFKD 334
            R  + +  C+ Y G+F++
Sbjct: 386 SRGRICIESCNLYDGEFRE 404


>AB209697-1|BAD92934.1|  892|Homo sapiens v-erb-a erythroblastic
           leukemia viral oncogene homolog 4 variant protein.
          Length = 892

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
 Frame = +2

Query: 125 FRHTSNALVIFSRIRH*I----NR----IKYEG-VCSHRCLSGSGCAGRGRLSYQNVDQG 277
           + HT N   +FS I   I    NR       EG VC+H C S  GC G G     +  + 
Sbjct: 68  YYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC-SSDGCWGPGPDQCLSCRRF 126

Query: 278 CRRTLSLPHCSAYYGQFKD 334
            R  + +  C+ Y G+F++
Sbjct: 127 SRGRICIESCNLYDGEFRE 145


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,430,443
Number of Sequences: 237096
Number of extensions: 1985179
Number of successful extensions: 3784
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3784
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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