BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0085 (797 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 87 1e-17 At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 87 1e-17 At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 40 0.001 At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.006 At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.006 At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.006 At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.008 At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 30 2.0 At4g30870.1 68417.m04383 repair endonuclease family protein cont... 29 2.7 At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 4.7 At2g27320.1 68415.m03284 hypothetical protein contains Pfam pr... 28 8.3 >At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) Length = 257 Score = 87.4 bits (207), Expect = 1e-17 Identities = 40/54 (74%), Positives = 46/54 (85%) Frame = +1 Query: 529 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKNMHML 690 + + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+K L Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCL 193 Score = 81.4 bits (192), Expect = 6e-16 Identities = 36/55 (65%), Positives = 44/55 (80%) Frame = +3 Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 401 L + KWPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE Sbjct: 43 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97 Score = 45.2 bits (102), Expect = 5e-05 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Frame = +1 Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP-SISASSARRL 291 NPLFE+RPK F IG + P +DLSR++ P SI +R+ Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61 Score = 33.9 bits (74), Expect = 0.13 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = +2 Query: 593 CQRYAVKWVYHTALSRASPASVHLYTARTCTCLALTNVESGDRASSRRSLEAIKTNF 763 C++ V + SR A VH +T +CL LT V++ D+ + LEAIK NF Sbjct: 165 CRKMEVPYCIVKGKSRLG-AVVH---QKTASCLCLTTVKNEDKLEFSKILEAIKANF 217 >At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S RIBOSOMAL PROTEIN L7A - Oryza sativa, SWISSPROT:RL7A_ORYSA Length = 256 Score = 87.0 bits (206), Expect = 1e-17 Identities = 39/49 (79%), Positives = 45/49 (91%) Frame = +1 Query: 529 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRK 675 + + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+K Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQK 187 Score = 81.8 bits (193), Expect = 5e-16 Identities = 37/55 (67%), Positives = 44/55 (80%) Frame = +3 Query: 237 LVQICKWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 401 L + KWPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE Sbjct: 42 LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96 Score = 45.2 bits (102), Expect = 5e-05 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Frame = +1 Query: 172 NPLFEKRPKNFAIGQGIQPTRDLSRFVSGP-SISASSARRL 291 NPLFE+RPK F IG + P +DLSR++ P SI +R+ Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60 Score = 29.9 bits (64), Expect = 2.0 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +2 Query: 593 CQRYAVKWVYHTALSRASPASVHLYTARTCTCLALTNVESGDRASSRRSLEAIKTNF 763 C++ V + SR A VH +T L LT V++ D+ + LEAIK NF Sbjct: 164 CRKMEVPYCIVKGKSRLG-AVVH---QKTAAALCLTTVKNEDKLEFSKILEAIKANF 216 >At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 156 Score = 40.3 bits (90), Expect = 0.001 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +1 Query: 526 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 654 R + L VIA ++ PI+++ LP LC + GVPY V K L Sbjct: 63 RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDL 105 >At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 160 Score = 38.3 bits (85), Expect = 0.006 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = +1 Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 657 VV+A D +P+E++L LP L VPY V K LG Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 122 >At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 128 Score = 38.3 bits (85), Expect = 0.006 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = +1 Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 657 VV+A D +P+E++L LP L VPY V K LG Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90 >At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 128 Score = 38.3 bits (85), Expect = 0.006 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = +1 Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 657 VV+A D +P+E++L LP L VPY V K LG Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90 >At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 128 Score = 37.9 bits (84), Expect = 0.008 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +1 Query: 547 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 657 +V+A D +P+E++L LP L VPY V K LG Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90 >At3g55580.1 68416.m06171 regulator of chromosome condensation (RCC1) family protein UVB-resistance protein UVR8, Arabidopsis thaliana, EMBL:AF130441; contains Pfam PF00415: Regulator of chromosome condensation (RCC1) domain Length = 488 Score = 29.9 bits (64), Expect = 2.0 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -3 Query: 285 SGAGCGYTWATYKSGQVTSW 226 SG GCG+ AT +SG++ +W Sbjct: 69 SGGGCGFAMATAESGKLITW 88 >At4g30870.1 68417.m04383 repair endonuclease family protein contains Pfam PF02732 : ERCC4 domain; similar to repair endonuclease (TIGR:At5g41150) [Arabidopsis thaliana] Length = 661 Score = 29.5 bits (63), Expect = 2.7 Identities = 20/46 (43%), Positives = 22/46 (47%) Frame = +2 Query: 605 AVKWVYHTALSRASPASVHLYTARTCTCLALTNVESGDRASSRRSL 742 AV +Y T LS AS S HLY +C T SGDR S L Sbjct: 503 AVLDMYPTLLSLASAYS-HLYQESSCDWFRSTLSSSGDRVSDHDQL 547 >At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC) family protein (MSS2) similar to SMC-related protein MSS2 [Arabidopsis thaliana] GI:9965743; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 1053 Score = 28.7 bits (61), Expect = 4.7 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = -1 Query: 497 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 339 + G+ P+ R +F + +S QP P CF L P L LE + +CS++ + Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021 >At2g27320.1 68415.m03284 hypothetical protein contains Pfam profile PF03080: Arabidopsis proteins of unknown function Length = 339 Score = 27.9 bits (59), Expect = 8.3 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +1 Query: 706 GVW*PRFFSKVVGSHQDELSTSANEGAS 789 G W R F +VVG EL T N+GAS Sbjct: 246 GNWILRIFDRVVGYWPKELFTHLNKGAS 273 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,787,236 Number of Sequences: 28952 Number of extensions: 304346 Number of successful extensions: 889 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 859 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 889 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1804564000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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