Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0039
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 69 8e-13
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 69 8e-13
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 69 8e-13
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 69 8e-13
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 69 8e-13
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 69 8e-13
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 69 8e-13
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 69 8e-13
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 69 8e-13
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 69 8e-13
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 69 8e-13
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 31 0.20
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom... 29 1.1
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 28 1.4
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 28 1.8
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 27 3.2
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 26 5.6
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 7.5
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.5
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.5
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 9.9
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 25 9.9
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/114 (31%), Positives = 60/114 (52%)
Frame = -1
Query: 823 GIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIV 644
G PK II D F+S+ K + F+ PY PQT G ER++ T+++ LR
Sbjct: 1042 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1101
Query: 643 ENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSD 482
+ +TW ++ +YN+ IHS T +P E++ + P ++ L+L ++SD
Sbjct: 1102 THPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP----ALSPLELPSFSD 1151
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/114 (31%), Positives = 60/114 (52%)
Frame = -1
Query: 823 GIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIV 644
G PK II D F+S+ K + F+ PY PQT G ER++ T+++ LR
Sbjct: 1042 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1101
Query: 643 ENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSD 482
+ +TW ++ +YN+ IHS T +P E++ + P ++ L+L ++SD
Sbjct: 1102 THPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP----ALSPLELPSFSD 1151
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/114 (31%), Positives = 60/114 (52%)
Frame = -1
Query: 823 GIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIV 644
G PK II D F+S+ K + F+ PY PQT G ER++ T+++ LR
Sbjct: 1042 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1101
Query: 643 ENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSD 482
+ +TW ++ +YN+ IHS T +P E++ + P ++ L+L ++SD
Sbjct: 1102 THPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP----ALSPLELPSFSD 1151
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/114 (31%), Positives = 60/114 (52%)
Frame = -1
Query: 823 GIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIV 644
G PK II D F+S+ K + F+ PY PQT G ER++ T+++ LR
Sbjct: 1042 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1101
Query: 643 ENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSD 482
+ +TW ++ +YN+ IHS T +P E++ + P ++ L+L ++SD
Sbjct: 1102 THPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP----ALSPLELPSFSD 1151
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/114 (31%), Positives = 60/114 (52%)
Frame = -1
Query: 823 GIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIV 644
G PK II D F+S+ K + F+ PY PQT G ER++ T+++ LR
Sbjct: 1042 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1101
Query: 643 ENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSD 482
+ +TW ++ +YN+ IHS T +P E++ + P ++ L+L ++SD
Sbjct: 1102 THPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP----ALSPLELPSFSD 1151
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/114 (31%), Positives = 60/114 (52%)
Frame = -1
Query: 823 GIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIV 644
G PK II D F+S+ K + F+ PY PQT G ER++ T+++ LR
Sbjct: 1042 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1101
Query: 643 ENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSD 482
+ +TW ++ +YN+ IHS T +P E++ + P ++ L+L ++SD
Sbjct: 1102 THPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP----ALSPLELPSFSD 1151
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/114 (31%), Positives = 60/114 (52%)
Frame = -1
Query: 823 GIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIV 644
G PK II D F+S+ K + F+ PY PQT G ER++ T+++ LR
Sbjct: 1042 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1101
Query: 643 ENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSD 482
+ +TW ++ +YN+ IHS T +P E++ + P ++ L+L ++SD
Sbjct: 1102 THPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP----ALSPLELPSFSD 1151
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/114 (31%), Positives = 60/114 (52%)
Frame = -1
Query: 823 GIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIV 644
G PK II D F+S+ K + F+ PY PQT G ER++ T+++ LR
Sbjct: 1042 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1101
Query: 643 ENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSD 482
+ +TW ++ +YN+ IHS T +P E++ + P ++ L+L ++SD
Sbjct: 1102 THPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP----ALSPLELPSFSD 1151
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/114 (31%), Positives = 60/114 (52%)
Frame = -1
Query: 823 GIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIV 644
G PK II D F+S+ K + F+ PY PQT G ER++ T+++ LR
Sbjct: 1042 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1101
Query: 643 ENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSD 482
+ +TW ++ +YN+ IHS T +P E++ + P ++ L+L ++SD
Sbjct: 1102 THPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP----ALSPLELPSFSD 1151
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/114 (31%), Positives = 60/114 (52%)
Frame = -1
Query: 823 GIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIV 644
G PK II D F+S+ K + F+ PY PQT G ER++ T+++ LR
Sbjct: 1042 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1101
Query: 643 ENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSD 482
+ +TW ++ +YN+ IHS T +P E++ + P ++ L+L ++SD
Sbjct: 1102 THPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP----ALSPLELPSFSD 1151
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 68.9 bits (161), Expect = 8e-13
Identities = 36/114 (31%), Positives = 60/114 (52%)
Frame = -1
Query: 823 GIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIV 644
G PK II D F+S+ K + F+ PY PQT G ER++ T+++ LR
Sbjct: 1042 GNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCS 1101
Query: 643 ENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSD 482
+ +TW ++ +YN+ IHS T +P E++ + P ++ L+L ++SD
Sbjct: 1102 THPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP----ALSPLELPSFSD 1151
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 31.1 bits (67), Expect = 0.20
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 546 NSSNGEKPVVEWILELYASIAVLRYKSHVCWFS 644
N+SN EK +WI+ IA+ RYK H FS
Sbjct: 610 NTSNDEKETAQWIVSFTGDIALSRYK-HFSKFS 641
>SPAC12B10.15c |||ribonuclease H2 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 347 CHIWFDTPAPFFNRYHTQTQ 288
CHI +D PAP F +H + Q
Sbjct: 26 CHISYDGPAPVFEYFHDKIQ 45
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 420 SRQKKKDPRPPNSAAADPV 364
S QKKK+P P +SA+A PV
Sbjct: 58 SIQKKKEPSPASSASASPV 76
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 251 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 165
++QK +P DK P N L+L A TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 670 KEYLRSYIVENQHTWDLYLRTAMLAYNSNIHSTTGFSPLE 551
KEYL S+I EN H D+Y ++ N+ S +G S ++
Sbjct: 3 KEYLVSHIEENAHQADIY---SLNVVAGNLWSASGDSKIK 39
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 748 FGIKHIFASPYHPQTCGALERSHSTL 671
F I+H +P HPQ LER H L
Sbjct: 277 FLIRHGIITPQHPQYLQTLERIHRPL 302
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1
Query: 589 SNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNT 491
SN++ + + + LL+G+ Y K++D+ LN+
Sbjct: 491 SNLYLDSSLNAMRLLYGWSVYKQKALDATLLNS 523
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 592 NSNIHSTTGFSPLELLFGFKPYIPKSID 509
++N T GF P+ +F PY P S +
Sbjct: 203 DTNELKTNGFEPIRFVFTTTPYSPASFE 230
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = -1
Query: 706 TCGALERSHSTLKEYLRSYIVENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPY 527
TC S+ST E L ++ L + A+LA + ++ T+ SPL + PY
Sbjct: 154 TCPLSFLSYSTGVERLSKELILKD-LLSLQFQQALLAISPSVIVTSEHSPLVMFQAINPY 212
Query: 526 IPKSI---DSLDLNTYSD 482
+ + D++D N +
Sbjct: 213 LNNNYYTHDTVDTNALEE 230
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 251 HIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAK-ERSDFVACP 123
H QK + P P++QNT H THP + SDF + P
Sbjct: 274 HQQK-KTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIP 316
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 105 TVESQTRAGDEIASFLRYC 161
T+E +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,002
Number of Sequences: 5004
Number of extensions: 63043
Number of successful extensions: 192
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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