Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0039
(826 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 57 2e-08
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 57 2e-08
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 57 2e-08
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p... 29 3.1
U41625-5|AAA83327.1| 700|Caenorhabditis elegans Suppressor of a... 29 3.1
AY091467-1|AAM44123.1| 700|Caenorhabditis elegans SUR-5 protein. 29 3.1
AF045646-8|AAK29830.1| 541|Caenorhabditis elegans Udp-glucurono... 29 3.1
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ... 29 4.0
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 29 4.0
U41007-17|AAA82261.1| 507|Caenorhabditis elegans Hypothetical p... 29 5.3
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 28 7.1
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z54307-6|CAA91093.1| 77|Caenorhabditis elegans Hypothetical pr... 28 9.3
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 28 9.3
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/94 (30%), Positives = 49/94 (52%)
Frame = -1
Query: 820 IPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIVE 641
IP ++TDQG F + + Q + I+HI Y+ + GA+ER + T+ ++
Sbjct: 1680 IPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAV 1739
Query: 640 NQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFG 539
WD + A+ AYN+ +H TG +P+ L+ G
Sbjct: 1740 PME-WDDQVVYAVYAYNNCVHENTGETPMFLMHG 1772
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/94 (30%), Positives = 49/94 (52%)
Frame = -1
Query: 820 IPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIVE 641
IP ++TDQG F + + Q + I+HI Y+ + GA+ER + T+ ++
Sbjct: 1583 IPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAV 1642
Query: 640 NQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFG 539
WD + A+ AYN+ +H TG +P+ L+ G
Sbjct: 1643 PME-WDDQVVYAVYAYNNCVHENTGETPMFLMHG 1675
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/94 (30%), Positives = 49/94 (52%)
Frame = -1
Query: 820 IPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIVE 641
IP ++TDQG F + + Q + I+HI Y+ + GA+ER + T+ ++
Sbjct: 1594 IPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAV 1653
Query: 640 NQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFG 539
WD + A+ AYN+ +H TG +P+ L+ G
Sbjct: 1654 PME-WDDQVVYAVYAYNNCVHENTGETPMFLMHG 1686
>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
protein B0222.9 protein.
Length = 1217
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 208 FGGLSMNGSWIFCMCEVYPGGVCNPSF 288
FGG N SWI CMC + + P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734
>U41625-5|AAA83327.1| 700|Caenorhabditis elegans Suppressor of
activated let-60ras protein 5 protein.
Length = 700
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 254 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 96
SH+QK+Q P KPP+ T L+ R+ K+ +D+ R D Y I
Sbjct: 38 SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89
>AY091467-1|AAM44123.1| 700|Caenorhabditis elegans SUR-5 protein.
Length = 700
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 254 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 96
SH+QK+Q P KPP+ T L+ R+ K+ +D+ R D Y I
Sbjct: 38 SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89
>AF045646-8|AAK29830.1| 541|Caenorhabditis elegans
Udp-glucuronosyltransferase protein52 protein.
Length = 541
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = -1
Query: 694 LERSHSTLKEYLRSYIVENQHTWDLYLRTAMLAYNSNIHST-TGFSPLELLFGFKPYIPK 518
L +SH + L +VEN HT DL + NS++ S T + +GF+ P
Sbjct: 41 LGKSHIDFTDSLIESLVENGHTVDLII----ARMNSHVKSNGTNMVTRKYTYGFQEESPW 96
Query: 517 SIDSLDLNTYSDYIRALNHRLYY 449
+ LN + R N YY
Sbjct: 97 NKAPHLLNPFKGRERTWNEHTYY 119
>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
protein F15E6.6 protein.
Length = 1228
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 208 FGGLSMNGSWIFCMCEVYPGGVCNPSFCV 294
FGG N SWI C+C V + P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = -1
Query: 823 GIPKIIITDQGANFSS--EVMKQLERLFGIK 737
G+P II + G+N ++ E +K+LERL+G +
Sbjct: 174 GVPDAIIGNSGSNAATTLETIKELERLYGTR 204
>U41007-17|AAA82261.1| 507|Caenorhabditis elegans Hypothetical
protein C33H5.2 protein.
Length = 507
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 582 ILELYASIAVLRYKSHV---CWFSTIYDLRYSFRVE*LLSRAPQVC 710
I +L+A + +RY S + C+ YD YS R E + PQ C
Sbjct: 417 IKKLFAELPKIRYYSDLVLKCYNEKFYDYFYSGRYEKITCPGPQYC 462
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 173 STHPTVAKERSDFVACPRLAFDCYKIVSARF 81
S H +A R A P L+FDCY++ F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 173 STHPTVAKERSDFVACPRLAFDCYKIVSARF 81
S H +A R A P L+FDCY++ F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544
>Z54307-6|CAA91093.1| 77|Caenorhabditis elegans Hypothetical
protein F14F11.2 protein.
Length = 77
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 623 VPCMLVFN--YIRPKIFFQSRMTSF*GATSLRVIWRSKNVFYS 745
V C+LV N YI P ++ ++ + + LR + S+N F+S
Sbjct: 12 VACLLVSNAMYINPDYYYVEQLPTMKKSGQLRALAGSRNCFFS 54
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 622 LYLRTAMLAYNS-NIHSTTGFSPLELLFGFKPYIPKSID 509
L LR AM A N +HST +P + FKP +P D
Sbjct: 2009 LVLRVAMEAKNELRMHSTAESTPRNEVKVFKPVVPNQYD 2047
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,849,057
Number of Sequences: 27780
Number of extensions: 351706
Number of successful extensions: 934
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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