Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0036
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 29 0.61
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 28 1.9
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 27 4.3
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.7
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 7.5
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 26 7.5
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 25 10.0
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 10.0
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 10.0
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 10.0
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 364 R*ISLLCVIHLFDVVVLSKFLSH 432
R IS LCVIH+ DV ++ FL H
Sbjct: 747 RFISELCVIHMLDVRAITNFLFH 769
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 185 PLMSPPSDGFLLYFFKFILYQSLGLLFIDRGTTKS 81
P + P DGFL + F + S+ LL++ +TKS
Sbjct: 187 PGLPQPGDGFLYLYVLFTYFISIFLLYVLFSSTKS 221
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -1
Query: 380 SNEIYLLSIYIKMNC--CSLVSLKLENGWTDLANFGLELFVEVQRRFKSLKKYENARN 213
++E+ +S Y + N S+ S +++ L NFGL++ V Q +LK ++RN
Sbjct: 140 ASEVLGISCYFEHNFLNASVPSYRIDYHLERLINFGLKVAVVRQTETAALKSTSSSRN 197
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 196 ILFFL*CPPRRTDSFCIFLSLF 131
++FFL P+ T SFC+FL F
Sbjct: 261 LIFFLNLVPKPTVSFCVFLRDF 282
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.8 bits (54), Expect = 7.5
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Frame = -1
Query: 389 ITHSNEIYLLSIYIKMNC-CSLVSLKLENGWTDLANFGLELFVEVQRRFKSLKKYENARN 213
IT +YL+S+ + CS VSL+L N W + GL + + N R
Sbjct: 55 ITTPPGLYLVSVALSPFIGCSNVSLRLIN-WL-VGVIGLPWLIN------DIVSLLNNRK 106
Query: 212 YIKTNNFVFPLMSPPSDGFLLYFFKFILYQSLG-----LLFIDRGTTKSDGSASINILIS 48
F + L S P L+FF F+ Y +G LL D KS S+S++ S
Sbjct: 107 GDVVTYFAYTLSSLPP----LWFFSFLYYTDIGSTFFVLLAYDFALRKSAFSSSVSCFFS 162
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 755 NIKYRYHYCQN*KKHLLSNFNYV 687
N +Y+Y CQ +K LL NY+
Sbjct: 118 NFQYQYSTCQGKRKALLIGINYL 140
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 209 IKTNNFVFPLMSPPSDGFLLYFFKFILYQSLGLLFID 99
I T F +S + G L+Y F F+ +++L + F++
Sbjct: 126 ILTFAFAGTFISAVTLGVLVYIFSFLNFENLSMTFVE 162
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 10.0
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = -1
Query: 227 ENARNYIKTNNFVFP--LMSPPSDGFLLYFFK---FILYQSLGLLFIDRGTTKSDGSASI 63
E N+++T+N +FP L+S + L + K + L S LL G +S +A +
Sbjct: 4 ETHENHLRTHNGIFPVSLLSTQARQLLNFKLKSPSYYLLNSFKLLVKSEGNNQST-TADV 62
Query: 62 NILISKSLTKQASSRDSR 9
+ S + +S+R+ +
Sbjct: 63 TLTKSPNAYHASSAREEK 80
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 287 NFGLELFVEVQR-RFKSLKKYENAR-NYIKTNNFVFPLMSPP 168
N LE V++ R +++ +E N + N +FPL SPP
Sbjct: 74 NASLETLPSVEKPRGRNMNAFEETSWNRFRKNGSLFPLSSPP 115
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 280 PKLAKSVQPFSSFSETNEQQFIF 348
P+L +S++P+ S + + Q+FIF
Sbjct: 920 PQLVRSLKPYISVLKQDHQEFIF 942
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,452,356
Number of Sequences: 5004
Number of extensions: 74026
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -