Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0035
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191... 35 0.060
01_05_0636 + 23852985-23853142,23853253-23853445,23853910-238540... 32 0.56
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 31 1.3
11_06_0707 + 26467214-26470309 30 2.3
11_06_0698 + 26385989-26389090 30 2.3
09_05_0005 + 20026190-20026343,20026483-20026682,20026918-200273... 29 3.0
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 29 4.0
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 29 4.0
10_08_0513 + 18460095-18460170,18460362-18460441,18461029-184614... 29 4.0
11_04_0374 + 16923063-16923176,16923214-16923363,16923547-16924101 29 5.2
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 29 5.2
01_01_0463 - 3424951-3425065,3425191-3425258,3425362-3425586,342... 29 5.2
02_01_0632 + 4740052-4740969,4742383-4743009 28 6.9
10_01_0075 - 979335-979954,980136-980405,980949-980989,981563-98... 28 9.2
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 28 9.2
>07_03_1752 -
29218348-29218524,29218593-29218736,29218957-29219148,
29219225-29219440,29219873-29220010,29220137-29220232,
29221204-29221357,29221976-29222098,29222291-29222418,
29222669-29222773,29223396-29223437,29223631-29223746,
29223805-29223916
Length = 580
Score = 35.1 bits (77), Expect = 0.060
Identities = 27/119 (22%), Positives = 53/119 (44%)
Frame = -3
Query: 650 NSFNYKVISLFDQHAPVRRVRIKHKPAPWLTPDIKTLMXXXXXXXXXXXRCPTEHSLAIY 471
N FN + ++F +A V ++I ++ + L P L P+ +A+
Sbjct: 242 NVFNPMLAAIFSGNAAV--IKIMNRASDTLIPVTLELGGKDAFIVCEDVDLPSVVQVAVR 299
Query: 470 KALRNRCNRLCRDAKRLYFHKSLENRSPAHTWRFLKSVGIGKTPVSSVKDTDLCALNKH 294
AL++ + C A+R Y HK + + + + +KS+ +G P+S D + +H
Sbjct: 300 AALQSS-GQNCAGAERFYVHKDIYSTFVSQVVKIIKSISVG-PPLSGRYDMGAICMIEH 356
>01_05_0636 +
23852985-23853142,23853253-23853445,23853910-23854033,
23854285-23854637,23855525-23856530,23856892-23857085,
23857238-23857324
Length = 704
Score = 31.9 bits (69), Expect = 0.56
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 131 IDNVCSKMIALILPTVAPILTDIFNFSFTS 42
IDN+C + +AL PT P+L + ++ F+S
Sbjct: 181 IDNICDESLALFPPTPPPVLVENYHEGFSS 210
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -3
Query: 338 VSSVKDTDLCALNKHFSLPPVSLSDSSKTATLLKISSLSVPRIPIFELSPVSVAD--VRN 165
+ +++DT+ AL KH + + + L KI+ V R+ L+ +V RN
Sbjct: 535 LENMEDTEFLALFKHHAFSGTEIKNPQLRGRLEKIAEKIVNRLGHSPLAASTVGSQLSRN 594
Query: 164 SFFSISSTAVGIDNVCSKMIALI 96
++ +A+ I+N+ M AL+
Sbjct: 595 KDINLWKSALNIENLSEPMKALL 617
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 64 ISVSIGATVGRIRAIILEHTLSIPTAVDEMEKKELRTSATETGL 195
+ +G+ + +++AII + T+ I DE+E+ + RT+ + L
Sbjct: 5 VDTLVGSCINKLQAIITDKTILILGVKDELEELQRRTNVIRSSL 48
>11_06_0698 + 26385989-26389090
Length = 1033
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 64 ISVSIGATVGRIRAIILEHTLSIPTAVDEMEKKELRTSATETGL 195
+ +G+ + +++AII + T+ I DE+E+ + RT+ + L
Sbjct: 5 VDTLVGSCINKLQAIITDKTILILGVKDELEELQRRTNVIRSSL 48
>09_05_0005 +
20026190-20026343,20026483-20026682,20026918-20027309,
20027646-20027778,20027858-20027942,20028216-20028235
Length = 327
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/90 (23%), Positives = 36/90 (40%)
Frame = -3
Query: 389 PAHTWRFLKSVGIGKTPVSSVKDTDLCALNKHFSLPPVSLSDSSKTATLLKISSLSVPRI 210
P++ + FL G G P+S DTD N+ P + + L + P +
Sbjct: 25 PSYAYLFLLFKGPGLLPLSHAPDTDSHGFNEGLPGQPPLWEGYRRLQSDLNV-GFPQPNL 83
Query: 209 PIFELSPVSVADVRNSFFSISSTAVGIDNV 120
+ L+PV + V S + + DN+
Sbjct: 84 QMLPLAPVKLEPVTEEHQSRGKSVIIADNL 113
>12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 671 HNINDMVNSFNYKVISLFDQHAPVRRVRIKHKPAPWLTPDIKTL 540
H + D N+F I LF PV IKH+ W D T+
Sbjct: 922 HKVEDYRNTFANLAIPLFSMAEPVPPKTIKHQDMAWTVWDRWTI 965
>11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 671 HNINDMVNSFNYKVISLFDQHAPVRRVRIKHKPAPWLTPDIKTL 540
H + D N+F I LF PV IKH+ W D T+
Sbjct: 1046 HKVEDYRNTFANLAIPLFSMAEPVPPKTIKHQDMAWTVWDRWTI 1089
>10_08_0513 +
18460095-18460170,18460362-18460441,18461029-18461491,
18461914-18462073,18462177-18462451,18462634-18462801,
18463012-18463064
Length = 424
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = -3
Query: 707 VNNTDWSCILEHHNINDM--VNSFNYKVISL 621
+N T+W+ ++++H I D+ ++ FNYK I +
Sbjct: 318 MNFTEWNLVVQYHPILDITQISGFNYKSIQV 348
>11_04_0374 + 16923063-16923176,16923214-16923363,16923547-16924101
Length = 272
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = -3
Query: 320 TDLCALNKHFSLPPVSLSDSSKTATLLKISSL--SVPRIPIFELSPVSVADVRNSFFSIS 147
T+LC+ + ++P S S+ + + ++ L + + + SP+SVAD ++S SI+
Sbjct: 87 TELCSSEQKVAIP-TKCSTSTLATSAMPLTDLVGTDTSLISYTSSPISVADAQSSIKSIA 145
Query: 146 STA 138
+T+
Sbjct: 146 ATS 148
>03_03_0266 - 16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -3
Query: 680 LEHHNINDMVNSFNYKVISLFDQHAPVRRVRIKHKPAPWL 561
L + MV F Y I++ H P ++ H+P W+
Sbjct: 983 LRFYGFGKMVACFRYAPINVHSIHVPPYKLDFSHQPLDWI 1022
>01_01_0463 -
3424951-3425065,3425191-3425258,3425362-3425586,
3425669-3425804,3425905-3426107,3426227-3426340,
3426432-3426506,3426625-3426783,3426868-3427038,
3427227-3427274,3427366-3427491,3427611-3427718,
3427800-3427913,3428320-3428496
Length = 612
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -3
Query: 221 VPRIPIFELSPVSVADVRNSFFSISSTAVGIDNVCSKMIALILPTVAPILTDIFNFSFTS 42
+PR P E SP+ + +R S S + +G D + ++ + L L + D+ S
Sbjct: 319 LPRPPAVEPSPILLRGIRQSLLSHLTLVLGKDELAAQCLLLHLLSRLRNKVDVVTVGRLS 378
Query: 41 SNF 33
NF
Sbjct: 379 LNF 381
>02_01_0632 + 4740052-4740969,4742383-4743009
Length = 514
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +1
Query: 67 SVSIGATVGRIRAIILEHTLSIPTAVDEMEKKELRTSATETGLNSKIGIRGTDRLEILSN 246
S+ + T+G I+A+ILE + A E L + TE +N K+ ++ D LSN
Sbjct: 291 SLQVPLTMGNIKAVILE----LFGAGSETSASTLHWAMTELIMNPKVMLKAQDE---LSN 343
Query: 247 VAVFDESLSD 276
V +++S+
Sbjct: 344 VIKGKQTISE 353
>10_01_0075 -
979335-979954,980136-980405,980949-980989,981563-981663
Length = 343
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 45 GKGKIENIGKYRCYRWKN*GNHFRAYVINSNSRG*DGE 158
G+G +E G+ R +RWK H AY+ + R GE
Sbjct: 16 GEGGVEVEGEGRKWRWKGRHQHGSAYISGPDRRFGGGE 53
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +1
Query: 121 TLSIPTAVDEMEKKELRTSAT----ETGLNSKIGIRGTDRLEILSNVAVFDESLSDTGGR 288
++ IP+ D + + RTSA + NS + GT +E +SN A E + + G
Sbjct: 21 SIPIPSQFDTSIETQTRTSAVVSSEKESANSFVPHNGTGLVERISNDAGLTEVVGSSAGP 80
Query: 289 EKCL 300
+C+
Sbjct: 81 TECI 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,381,832
Number of Sequences: 37544
Number of extensions: 413810
Number of successful extensions: 979
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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