Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0034
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 36 0.009
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 3.3
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 27 4.4
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 27 4.4
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 4.4
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 27 4.4
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 26 5.8
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 5.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 5.8
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 7.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.6
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 35.5 bits (78), Expect = 0.009
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = -2
Query: 554 TRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGET--EKTTP 381
T AT TSS ++S A SNS +++ SSS N T + +++ST ++ T TT
Sbjct: 204 TSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTA 263
Query: 380 ATMSAGNSS 354
AT ++ SS
Sbjct: 264 ATSASATSS 272
Score = 31.9 bits (69), Expect = 0.12
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETE 393
S TS ++ TSS ++S A SNS +++ SSS N T + +L+ST + +
Sbjct: 166 STTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSS 225
Query: 392 KTTPATMSAGNSS 354
+++++ S+
Sbjct: 226 SLASSSLNSTTSA 238
Score = 29.1 bits (62), Expect = 0.82
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3
Query: 193 GGRPTAVPHREPGVPAGTE 137
GG PTA P EP V GTE
Sbjct: 835 GGNPTAAPTNEPTVTTGTE 853
Score = 28.3 bits (60), Expect = 1.4
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = -2
Query: 551 RATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATM 372
RAT + + TS A+S+S +++ SSS + L++ + STT+A P + T +
Sbjct: 58 RATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLAS--SSTNSTTSASPTSSSLT---SS 112
Query: 371 SAGNSSLFGKTTT 333
SA +SSL +TT
Sbjct: 113 SATSSSLASSSTT 125
Score = 27.5 bits (58), Expect = 2.5
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Frame = -2
Query: 554 TRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA--*PGETEKTTP 381
T ++ TSS + S + ++S + ++SS+ + +++ L +STT++ T TT
Sbjct: 110 TSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTS 169
Query: 380 A--TMSAGNSSL 351
A T SA +SSL
Sbjct: 170 ATPTSSATSSSL 181
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRA----NSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*P 405
S S + +T TSS +++ + +S+S ST+ LSSS++ + S+ + ++++
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSS 279
Query: 404 GETEKTTPATMSAGNSSLFGKTTT 333
+ +T +T+S+ +SS T+T
Sbjct: 280 SSSPTSTSSTISSSSSSSSSPTST 303
Score = 27.5 bits (58), Expect = 2.5
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETE 393
S +S + T TSS I+S ++S+S ++ SSS + + S+ + +ST ++
Sbjct: 292 SSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPS 351
Query: 392 KT--TPATMSAGNSSLFGKTTT 333
+ + T S+ +SS F T +
Sbjct: 352 SSSFSSTTSSSKSSSSFSSTVS 373
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/72 (25%), Positives = 41/72 (56%)
Frame = -2
Query: 581 PCRSRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PG 402
P S +S + + +SSK +S + S+S S++ SSS++ + S+ + +S ++A P
Sbjct: 154 PSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPS 213
Query: 401 ETEKTTPATMSA 366
++ ++ + S+
Sbjct: 214 SSKSSSKFSSSS 225
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.5
Identities = 22/73 (30%), Positives = 41/73 (56%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETE 393
S +S + TSS +S ++S+S S++ SSS++ S+++ T++S+T T
Sbjct: 200 SSSSSSSSVPITSSTSSSHSSSSSSSSS---SSSSSRPSSSSSFITTMSSSTFI---STV 253
Query: 392 KTTPATMSAGNSS 354
TP++ S+ SS
Sbjct: 254 TVTPSSSSSSTSS 266
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 441 DANVGEYNDRLTWGDGKDYTSHHVSWQLISLWEDNNVIFKILNTE 307
D + E N+R+ G KD + +S ++ +D N FK++N E
Sbjct: 929 DIYIDESNERVVKGKSKDNFEYFLSGNTVTRKKD-NACFKMMNFE 972
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -3
Query: 190 GRPTAVPHRE-PGVPAGTEAGRERGLIRGPPCV 95
G T VP + PG G A R GL+RG V
Sbjct: 219 GHSTTVPRQSAPGQKVGLIAARRTGLLRGAAAV 251
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -3
Query: 190 GRPTAVPHRE-PGVPAGTEAGRERGLIRGPPCV 95
G T VP + PG G A R GL+RG V
Sbjct: 219 GHSTTVPRQSAPGQKVGLIAARRTGLLRGAAAV 251
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.6 bits (56), Expect = 4.4
Identities = 30/127 (23%), Positives = 42/127 (33%)
Frame = -3
Query: 766 DGIQHEDGLCRRNVNQQPLVQLGYGRRLHQRGEDCAXXXXXXXXXXXXXXXXXXXXXGHQ 587
DGIQH DGL + + + +L + R E+
Sbjct: 706 DGIQHLDGLLKLSACNNRIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLD 765
Query: 586 EHHVVRVQAVARGPQGHRRRLLPERIPTHTRPTDN*AHRQTLQSSSQTGC*RWRVQRPPD 407
+ + ++ A P H R L H D H +TL R RPPD
Sbjct: 766 NNKLTNLK--ASQPMIHLRILRISNNAIHQLEVDQFPHLRTLYMDLN------RFNRPPD 817
Query: 406 LGRRKRL 386
+ R KRL
Sbjct: 818 IRRLKRL 824
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -3
Query: 190 GRPTAVPHRE-PGVPAGTEAGRERGLIRGPPCV 95
G T VP + PG G A R GL+RG V
Sbjct: 219 GHSTTVPRQSAPGQKVGLIAARRTGLLRGAAAV 251
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 279 NVDSYGDRKTWGSNGSS 229
N SYG T+GSNGSS
Sbjct: 72 NYGSYGASNTYGSNGSS 88
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 479 LIICWSSMSWNSLGK*SSTMSLWP 550
+I C+SS W LG SS S WP
Sbjct: 779 IIPCFSSECWLLLGHNSSVYSNWP 802
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 5.8
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETE 393
S +C ++A SS I A+S S S + S N T +N +L S +T G+T
Sbjct: 239 SSKNCLSKALAFSS-IEPPASSASTSPRNTPTPSNNGTSINANVTSSLTSNST---GKTS 294
Query: 392 KTTPATMSAGNSSLFGKTT 336
KTT ++A SL +T
Sbjct: 295 KTTDLLIAASKKSLPSNST 313
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 340 VFPKRDELPADMVAGVVFSVSPG-QAVVVLANVS 438
+ P ++PAD+ A + S PG + VVV N++
Sbjct: 735 ILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIA 768
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +3
Query: 90 SPTQGGPRMSPRSRPASVPAGTPGSR*GTAVGLPPLPGIKTRCVSS 227
S T P + P S ++ P S T PLP T C +S
Sbjct: 297 STTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTS 342
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,432
Number of Sequences: 5004
Number of extensions: 61808
Number of successful extensions: 202
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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