Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0034
(840 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK131480-1|BAD18625.1| 325|Homo sapiens protein ( Homo sapiens ... 41 0.006
AK125605-1|BAC86216.1| 358|Homo sapiens protein ( Homo sapiens ... 36 0.18
AK094020-1|BAC04270.1| 145|Homo sapiens protein ( Homo sapiens ... 35 0.32
L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein. 33 0.97
BC117238-1|AAI17239.1| 676|Homo sapiens LIM domains containing ... 31 3.9
BC117236-1|AAI17237.1| 676|Homo sapiens LIM domains containing ... 31 3.9
AJ312686-1|CAC35917.1| 503|Homo sapiens LIM domains containing ... 31 3.9
AJ132408-1|CAB63652.1| 676|Homo sapiens LIM domains containing ... 31 3.9
BC025959-1|AAH25959.1| 492|Homo sapiens dynein, cytoplasmic 1, ... 31 6.9
AF035812-1|AAB88513.1| 492|Homo sapiens dynein light intermedia... 31 6.9
BC052963-1|AAH52963.1| 1394|Homo sapiens SRCAP protein protein. 30 9.1
AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein. 30 9.1
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat... 30 9.1
AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein. 30 9.1
>AK131480-1|BAD18625.1| 325|Homo sapiens protein ( Homo sapiens
cDNA FLJ16652 fis, clone TESTI4036767. ).
Length = 325
Score = 40.7 bits (91), Expect = 0.006
Identities = 49/166 (29%), Positives = 62/166 (37%), Gaps = 4/166 (2%)
Frame = -3
Query: 553 RGPQGHRRRLLPERIPTHTRPTDN*AHRQTLQSSSQTGC*RWRVQRPPDLGRRKRLHQPP 374
R PQ P+R PTH P + HR + + R R P +R H+PP
Sbjct: 27 RAPQRDPTHRAPQRDPTHRAPQRDPTHRAPQRDPTHRAPQRDPTHRAP---QRDPTHRPP 83
Query: 373 CQLATHLSLGRQQRDIQDTEHRI--RDVLETGRERGQLRR--QEDLGIEWFQ*EETHLVF 206
+ TH + R D HR RD +RG R Q Q + TH
Sbjct: 84 QRDPTHRAPQR------DPTHRAPQRDPTHRAPQRGPRHRAPQRSPRHRAPQRDPTHRA- 136
Query: 205 IPGKGGRPTAVPHREPGVPAGTEAGRERGLIRGPPCVGEQRDSRRQ 68
P +G R A P R+P A R R RGP QR R +
Sbjct: 137 -PQRGPRHRA-PQRDPTHRAPQRGPRHRAPQRGPTHRAPQRGPRHR 180
Score = 33.1 bits (72), Expect = 1.3
Identities = 49/180 (27%), Positives = 64/180 (35%), Gaps = 6/180 (3%)
Frame = -3
Query: 583 HHVVRVQAVARGPQGHRRRLLPERIPTHTRPTDN*AHRQTLQSSSQTGC*RWRVQRPPDL 404
H + R PQ P+R PTH P + HR + + R R P
Sbjct: 35 HRAPQRDPTHRAPQRDPTHRAPQRDPTHRAPQRDPTHRAPQRDPTHRPPQRDPTHRAP-- 92
Query: 403 GRRKRLHQPPCQLATHLSLGRQQR---DIQDTEHRI--RDVLETGRERGQLRRQEDLGIE 239
+R H+ P + TH + R R + HR RD +RG R
Sbjct: 93 -QRDPTHRAPQRDPTHRAPQRGPRHRAPQRSPRHRAPQRDPTHRAPQRGPRHRAP----- 146
Query: 238 WFQ*EETHLVFIPGKGGRPTAVPHREPGVPAGTEAGRERGLIRGPPCVGEQR-DSRRQPR 62
Q + TH P +G R A P R P A R R RGP QR + R P+
Sbjct: 147 --QRDPTHRA--PQRGPRHRA-PQRGPTHRAPQRGPRHRAPQRGPRHRAPQRGPTHRAPQ 201
>AK125605-1|BAC86216.1| 358|Homo sapiens protein ( Homo sapiens
cDNA FLJ43617 fis, clone SPLEN2016863. ).
Length = 358
Score = 35.9 bits (79), Expect = 0.18
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Frame = -3
Query: 454 SSQTGC*RWRVQRPPDLGRRKRLHQPPCQLATHLSLGRQQRDIQDTEHRIRDVLETGRER 275
+++TG W VQR P R R H+ C+ H + +Q + R RD G
Sbjct: 223 AAETGV-LWAVQRSPPRSRDGRPHRQ-CRGHHHTAETGVLWAVQRSPPRSRDRRPVGSAE 280
Query: 274 GQLRRQEDLGIEWFQ*EETHLVFIPGKGGRPTAVPHREPGVPAG--TEAGRERGLIRG 107
Q LG+ W + + F P K +P+ + P EA RGL +G
Sbjct: 281 VTTLSQTVLGLPWVEHRMKTMCFEPWKDNQPSQSQSLKQAAPRAQLQEAASSRGLQQG 338
>AK094020-1|BAC04270.1| 145|Homo sapiens protein ( Homo sapiens
cDNA FLJ36701 fis, clone UTERU2009147. ).
Length = 145
Score = 35.1 bits (77), Expect = 0.32
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = -3
Query: 184 PTAVPHREPGVPAGTEAGRERGLIRGPPCVGEQRDSRRQPRVLRLHNPA 38
P PH G PA TEAGR L+R P VG + + + PR L PA
Sbjct: 39 PCWAPHSPCGSPAATEAGR---LMRRLPSVGGRMTAPKTPRFLTRRPPA 84
>L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein.
Length = 1898
Score = 33.5 bits (73), Expect = 0.97
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = -3
Query: 478 AHRQTLQSSSQTG-C*RWRVQRPPDLGRRKRLHQPPCQLATHLSLGRQQRDIQDTEHRIR 302
AHRQ + + +W+ + + GR++ +PP + L ++R Q E R
Sbjct: 772 AHRQQQEEEQRRDFTWQWQAEEKSERGRQRLSARPPLREQRERQLRAEER--QQREQRFL 829
Query: 301 DVLETGRERGQLRRQEDLGIEWFQ*EE 221
E +RG+ RR+ + +++ + EE
Sbjct: 830 PEEEEKEQRGRQRREREKELQFLEEEE 856
>BC117238-1|AAI17239.1| 676|Homo sapiens LIM domains containing 1
protein.
Length = 676
Score = 31.5 bits (68), Expect = 3.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 99 QGGPRMS-PRSRPASVPAGTPGSR*GTAVGLPPLPG 203
Q GP+ S P+S PAG GS+ G GL P PG
Sbjct: 338 QDGPKSYLSSSAPSSSPAGLDGSQQGAVPGLGPKPG 373
>BC117236-1|AAI17237.1| 676|Homo sapiens LIM domains containing 1
protein.
Length = 676
Score = 31.5 bits (68), Expect = 3.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 99 QGGPRMS-PRSRPASVPAGTPGSR*GTAVGLPPLPG 203
Q GP+ S P+S PAG GS+ G GL P PG
Sbjct: 338 QDGPKSYLSSSAPSSSPAGLDGSQQGAVPGLGPKPG 373
>AJ312686-1|CAC35917.1| 503|Homo sapiens LIM domains containing 1
protein.
Length = 503
Score = 31.5 bits (68), Expect = 3.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 99 QGGPRMS-PRSRPASVPAGTPGSR*GTAVGLPPLPG 203
Q GP+ S P+S PAG GS+ G GL P PG
Sbjct: 338 QDGPKSYLSSSAPSSSPAGLDGSQQGAVPGLGPKPG 373
>AJ132408-1|CAB63652.1| 676|Homo sapiens LIM domains containing
protein 1 protein.
Length = 676
Score = 31.5 bits (68), Expect = 3.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 99 QGGPRMS-PRSRPASVPAGTPGSR*GTAVGLPPLPG 203
Q GP+ S P+S PAG GS+ G GL P PG
Sbjct: 338 QDGPKSYLSSSAPSSSPAGLDGSQQGAVPGLGPKPG 373
>BC025959-1|AAH25959.1| 492|Homo sapiens dynein, cytoplasmic 1,
light intermediate chain 2 protein.
Length = 492
Score = 30.7 bits (66), Expect = 6.9
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +3
Query: 90 SPTQGGPRMSPRSRPASVPAGTPGSR*GTAVGLPPLPGIKTRCVS 224
SP +G P SPR++ PA P S GT+V P P IK S
Sbjct: 383 SPARG-PSGSPRTQGRGGPASVPSSSPGTSVKKPD-PNIKNNAAS 425
>AF035812-1|AAB88513.1| 492|Homo sapiens dynein light intermediate
chain 2 protein.
Length = 492
Score = 30.7 bits (66), Expect = 6.9
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +3
Query: 90 SPTQGGPRMSPRSRPASVPAGTPGSR*GTAVGLPPLPGIKTRCVS 224
SP +G P SPR++ PA P S GT+V P P IK S
Sbjct: 383 SPARG-PSGSPRTQGRGGPASVPSSSPGTSVKKPD-PNIKNNAAS 425
>BC052963-1|AAH52963.1| 1394|Homo sapiens SRCAP protein protein.
Length = 1394
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 21 KGVTATAGL*SRSTRGCRRLSRCSPTQGG-PRMSPRSRP--ASVPAGTP 158
+G T + + TR RCSP + PR +PR RP AS PA P
Sbjct: 571 QGANHTPVISAHQTRSTTTPPRCSPARERVPRPAPRPRPTPASAPAAIP 619
>AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.
Length = 1943
Score = 30.3 bits (65), Expect = 9.1
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -3
Query: 478 AHRQTLQSSSQTG-C*RWRVQRPPDLGRRKRLHQPPCQLATHLSLGRQQRDIQDTEHRIR 302
AHRQ + + +W+ + + GR++ +PP + L ++R Q E R
Sbjct: 754 AHRQQQEEEQRRDFTWQWQAEEKSERGRQRLSARPPLREQRERQLRAEER--QQREQRFL 811
Query: 301 DVLETGRERGQLRRQEDLGIEWFQ*EE 221
E +R + RR+ + +++ + EE
Sbjct: 812 PEEEEKEQRRRQRREREKELQFLEEEE 838
>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
SRCAP protein.
Length = 2971
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 21 KGVTATAGL*SRSTRGCRRLSRCSPTQGG-PRMSPRSRP--ASVPAGTP 158
+G T + + TR RCSP + PR +PR RP AS PA P
Sbjct: 2148 QGANHTPVISAHQTRSTTTPPRCSPARERVPRPAPRPRPTPASAPAAIP 2196
>AB002307-1|BAA20768.2| 3053|Homo sapiens KIAA0309 protein.
Length = 3053
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 21 KGVTATAGL*SRSTRGCRRLSRCSPTQGG-PRMSPRSRP--ASVPAGTP 158
+G T + + TR RCSP + PR +PR RP AS PA P
Sbjct: 2230 QGANHTPVISAHQTRSTTTPPRCSPARERVPRPAPRPRPTPASAPAAIP 2278
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,126,476
Number of Sequences: 237096
Number of extensions: 2600809
Number of successful extensions: 11058
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11017
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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