Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0034
(840 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 31 1.3
AL132898-11|CAB60945.4| 552|Caenorhabditis elegans Hypothetical... 29 3.1
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 29 3.1
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 29 4.1
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 29 4.1
U23528-6|AAK31385.1| 216|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 29 4.1
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 29 4.1
U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z47809-7|CAA87783.1| 662|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z47808-10|CAA87778.1| 662|Caenorhabditis elegans Hypothetical p... 28 9.5
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 9.5
J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein. 28 9.5
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/80 (25%), Positives = 41/80 (51%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETE 393
S +S T +T +SS + ++ +S S++ SSSA+ T +STT++ T
Sbjct: 45 SSSSSSTASTSSSSSTAATSSDDSSSSSSSSSSSASSTSSSDTTTADSSSTTSSDSSTTS 104
Query: 392 KTTPATMSAGNSSLFGKTTT 333
+ ++ S+ +S+ +T+
Sbjct: 105 SNSSSSTSSSDSTSVVSSTS 124
>AL132898-11|CAB60945.4| 552|Caenorhabditis elegans Hypothetical
protein Y59A8B.22 protein.
Length = 552
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 174 FLIENREYRQGLKLDANVDSYGDRLVWGSNGTVADNPEYYGFIIQP 37
+ + R Q +K + V + +W +GT+ DN Y GFII P
Sbjct: 120 YTVHTRTRLQEMKPETAVVREHEEFLW-LHGTLEDNENYAGFIIPP 164
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -2
Query: 566 TSCGTRATRTSSKITSRANSNSYSTNR*LSS-SANITIKLSNWMLTLASTTTA*PGETEK 390
++ GT T +++ N N+ ST ++ SA + S+ +AS+TTA PG +
Sbjct: 889 STSGTTVVTTQGSSSTQTNPNTGSTGSTVTQPSAFSSTSASSSTQPIASSTTANPGSSTS 948
Query: 389 TTPATMSAGNSS 354
+ G+SS
Sbjct: 949 GPTIASTQGSSS 960
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSS--ANITIKLSNWMLTLASTTTA*PGE 399
S + T+A +SS +T+ A+S T+ SSS ++ S ++T+++T T G+
Sbjct: 472 SNSPTSTQAI-SSSTVTTVASSTIAPTSSQESSSIASSSAPSQSTTVITVSTTATVSSGQ 530
Query: 398 TEKTTPATMSAGNSSLFGKTT 336
+ T T+ G+S FG +T
Sbjct: 531 STSTFGTTIGQGSS--FGSST 549
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSS---ANITIKLSNWMLTLASTTTA*PG 402
S T T+++ SS +T+ ++ S TN+ SSS A+ T +++ S+T+
Sbjct: 780 SSTMGSTQSSLPSSTMTNTGSTGSTVTNQLASSSTYGASSTEPIASSTANPGSSTSGQTA 839
Query: 401 ETEKTTPATMSAGNSSLFGKTTT 333
T + + +T + N+ G T T
Sbjct: 840 VTTQGSSSTQTNSNTGSTGSTVT 862
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYST---NR*LSSSANITIKLSNWMLTLASTTTA*PG 402
S T+ T +T S+ TS + S S ST +S++ + S+ + T+T
Sbjct: 519 STTTSSTTSTEASTPTTSTSTSTSTSTPSTTTSTTSTSTTSSTSSSAPIRAVRTSTPTTR 578
Query: 401 ETEKTTPATMSAGNSSLFGKTTT*YSRY 318
T TTP + ++FG+ + ++ +
Sbjct: 579 RTTTTTPRRTTTPRKTIFGRMSDGWNNF 606
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Frame = -3
Query: 415 PPDLGRRKRLHQPPCQLATHLSLGRQQRDIQDTEHRIRDVLET-GRERGQLRRQEDLGIE 239
PP G + P T + +QQ+ +Q + + G++ G Q+ +G +
Sbjct: 727 PPPQGAFPPGYLPGGAQPTQQQIWQQQQQLQQQRMAMFQQQQAQGQQPGG--PQQPMG-Q 783
Query: 238 WFQ*EETHLVFIPGKGGRPTAVPHREPGVPAGTEAGRERGLIRGPP 101
W Q + + + PG P AV ++ +P T R G PP
Sbjct: 784 WPQQRQLPVPYPPGNNSTPDAVNQQQNPIPGATMQHRLSGEFAPPP 829
>U23528-6|AAK31385.1| 216|Caenorhabditis elegans Hypothetical
protein B0034.4 protein.
Length = 216
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 184 PTA-VPHREPGVPAGTEAGRERGLIRGPPCVGEQ-RDSRRQPRV 59
PTA P +E V A T+ ER + +GPP V E +D ++ P V
Sbjct: 77 PTAPTPKKEKKVVATTKK-TERSVAQGPPLVSEHIKDEKKMPSV 119
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 479 SSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSAGNSSLFGKTT 336
+S+ +IT + T+ STTTA P T TP T + S++ TT
Sbjct: 150 TSTTSITTSTLSPPSTVQSTTTAKPTTTSTITPTTSADPTSTITTSTT 197
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETE 393
S TS T T TS+ ++ +++S +T S+ T S T STT + T
Sbjct: 185 STTSSTTTTTATSTTESTSTSTDSTTTESTTESTTEST-STSTDSTTTESTTESTTESTS 243
Query: 392 KTTPATMSAGNSSLFGKTTT 333
+T +T + S+ TTT
Sbjct: 244 TSTDSTTTESTSTSTDSTTT 263
>U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical
protein C30G12.1 protein.
Length = 469
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = -2
Query: 545 TRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSA 366
T+T+ +IT+ + + T+ + ++ ++S + STTT P + TPATM +
Sbjct: 287 TKTNPQITTTTMTTTTRTSTAIPTTTTTPRQISLQTIPF-STTTRQPNFDKTKTPATMPS 345
Query: 365 GNSSLFGKTTT 333
+SS T
Sbjct: 346 ASSSSLSSIQT 356
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 96 TQGGPRMSPRSRPASVPAGTPGSR*GTAVGLPPLPG 203
++GG P++ A P + GS GT VG+P +PG
Sbjct: 47 SRGGMFGGPKASNAPPPQTSFGSTSGTRVGVPIMPG 82
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = -2
Query: 569 RTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEK 390
+ C T +T T+S T+ + +T +++ + T TTT ET
Sbjct: 59 KADCTTTSTTTTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTET-T 117
Query: 389 TTPATMSAGNSSLFGKTTT 333
TTP T + ++ TTT
Sbjct: 118 TTPTTTTPTTTTTTPTTTT 136
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = -2
Query: 566 TSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKT 387
T+ T T T++ T+ + +T +++A T + T TTT T T
Sbjct: 163 TTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTT 222
Query: 386 TPATMSAGNSSLFGKTTT 333
TP T + ++ TTT
Sbjct: 223 TPTTTTTTTTTPTTTTTT 240
>Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical
protein B0491.2 protein.
Length = 324
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -3
Query: 325 QDTEHRIRDVLETGRERGQLRRQEDLGIEWFQ*EETHLVFIPGKGGRPTAVPHREPGVP 149
Q T +D++ GR ++RRQ EET+ P G P+A P + P VP
Sbjct: 48 QSTNGLWKDIVVIGRSSKRVRRQY---------EETNATPTPHADGSPSAPPGQPPAVP 97
>Z47809-7|CAA87783.1| 662|Caenorhabditis elegans Hypothetical
protein D2013.9 protein.
Length = 662
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 96 WGSNGTVADNPEYYGFIIQPW 34
W SN A +PE+ +I QPW
Sbjct: 255 WASNVITAQHPEWRKYIEQPW 275
>Z47808-10|CAA87778.1| 662|Caenorhabditis elegans Hypothetical
protein D2013.9 protein.
Length = 662
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 96 WGSNGTVADNPEYYGFIIQPW 34
W SN A +PE+ +I QPW
Sbjct: 255 WASNVITAQHPEWRKYIEQPW 275
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -3
Query: 202 PGKGGRPTAVPHREPGVPAGTEAGRERGLIRGPP 101
PG+ GRP A P R PG P GR+ L+ GPP
Sbjct: 119 PGRDGRPGA-PGR-PGNPG--PPGRDGALLPGPP 148
>J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein.
Length = 324
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -3
Query: 325 QDTEHRIRDVLETGRERGQLRRQEDLGIEWFQ*EETHLVFIPGKGGRPTAVPHREPGVP 149
Q T +D++ GR ++RRQ EET+ P G P+A P + P VP
Sbjct: 48 QSTNGLWKDIVVIGRSSKRVRRQY---------EETNATPTPHADGSPSAPPGQPPAVP 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,803,434
Number of Sequences: 27780
Number of extensions: 379707
Number of successful extensions: 1391
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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