Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0034
(840 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 26 0.38
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 24 2.0
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 3.5
DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 23 4.6
DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 23 4.6
DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 23 4.6
DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 23 4.6
DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 23 4.6
DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 23 4.6
DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 23 4.6
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 23 4.6
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 23 4.6
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 23 4.6
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 23 4.6
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 23 4.6
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 23 4.6
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 26.2 bits (55), Expect = 0.38
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 299 ISYSVFSILNITLLSSQREMSCQLTWWL 382
++ SVF+++ LL +EMS ++ +W+
Sbjct: 323 LALSVFALILTALLRKMQEMSIEVPYWI 350
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.8 bits (49), Expect = 2.0
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 10/112 (8%)
Frame = -3
Query: 562 AVARGPQGHRRRLLPERIPTHTRPTDN*AH-RQTLQSSSQTGC*RWRVQRPPDLGRR--- 395
A++ G R R H+R D+ R + ++ + C R R + RR
Sbjct: 211 AISSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQ 270
Query: 394 ------KRLHQPPCQLATHLSLGRQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
K L + + S R+Q+ ++ E R+ ET RER + RR+
Sbjct: 271 LHNVEEKHLRERTSRRRYSRSREREQKSYKN-EREYREYRETSRERSRDRRE 321
Score = 23.4 bits (48), Expect = 2.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 497 SMSWNSLGK*SSTMSLWPSCHSLY 568
++S NSLG S + SCHS Y
Sbjct: 211 AISSNSLGSRSRSFQRTSSCHSRY 234
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.0 bits (47), Expect = 3.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 90 SPTQGGPRMSPRSRPASVPAGTPGSR*GTAVGLPPLPGI 206
+P +G P + P P G P S+ + + + P GI
Sbjct: 33 APQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGI 71
>DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 45 REQKSYKN-EREYREYRETSRERSRDRRE 72
>DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 45 REQKSYKN-EREYREYRETSRERSRDRRE 72
>DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 45 REQKSYKN-EREYREYRETSRERSRDRRE 72
>DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 45 REQKSYKN-EREYREYRETSRERSRDRRE 72
>DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 45 REQKSYKN-EREYREYRETSRERSRDRRE 72
>DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 45 REQKSYKN-EREYREYRETSRERSRDRRE 72
>DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 45 REQKSYKN-EREYREYRETSRERSRDRRE 72
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 294 REQKSYKN-EREYREYRETSRERSRDRRE 321
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 294 REQKSYKN-EREYREYRETSRERSRDRRE 321
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 294 REQKSYKN-EREYREYRETSRERSRDRRE 321
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 294 REQKSYKN-EREYREYRETSRERSRDRRE 321
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 294 REQKSYKN-EREYREYRETSRERSRDRRE 321
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 343 RQQRDIQDTEHRIRDVLETGRERGQLRRQ 257
R+Q+ ++ E R+ ET RER + RR+
Sbjct: 294 REQKSYKN-EREYREYRETSRERSRDRRE 321
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,794
Number of Sequences: 438
Number of extensions: 4828
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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