Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0034
(840 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00... 34 0.14
At1g48540.2 68414.m05428 leucine-rich repeat family protein 30 2.2
At1g48540.1 68414.m05427 leucine-rich repeat family protein 30 2.2
At1g30760.1 68414.m03761 FAD-binding domain-containing protein s... 30 2.2
At1g10830.1 68414.m01244 sodium symporter-related contains five ... 30 2.2
At5g01280.1 68418.m00037 expressed protein 29 3.8
At1g76070.1 68414.m08834 expressed protein 29 3.8
At1g47410.1 68414.m05250 expressed protein identical to hypothet... 28 6.7
At1g28300.1 68414.m03473 transcriptional factor B3 family protei... 28 6.7
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei... 28 8.9
At2g32040.1 68415.m03914 integral membrane transporter family pr... 28 8.9
At1g19360.1 68414.m02409 expressed protein 28 8.9
>At2g15640.1 68415.m01791 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 426
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -1
Query: 348 WEDNNVIFKILNTEYEMYLKLDVNVDSYGDRKTWGSNGSSEKRHTWSLYPVKVGDQQLF 172
WED+ I+K+ ++ + Y++ ++N D + + W K+ WS Y D + F
Sbjct: 278 WEDDVDIYKLYYSDVDEYVEYNINDDDINELRVWVL--EDVKKQQWSKYAYTWTDDRFF 334
>At1g48540.2 68414.m05428 leucine-rich repeat family protein
Length = 1051
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = -1
Query: 729 TSINNHLYNLVTGGDYINAVKTVRSLVDNQGSDVCRDVVSRLVSQGIKNTMSFAYKLWHE 550
+ ++ HL LV + + ++ + +L QG DV +++S ++S +LW E
Sbjct: 232 SQVSCHLVKLVLRNNALTTLRGIENLKSLQGLDVSYNIISNFSELEFLWSLSQLKELWLE 291
Query: 549 GH 544
G+
Sbjct: 292 GN 293
>At1g48540.1 68414.m05427 leucine-rich repeat family protein
Length = 1063
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = -1
Query: 729 TSINNHLYNLVTGGDYINAVKTVRSLVDNQGSDVCRDVVSRLVSQGIKNTMSFAYKLWHE 550
+ ++ HL LV + + ++ + +L QG DV +++S ++S +LW E
Sbjct: 232 SQVSCHLVKLVLRNNALTTLRGIENLKSLQGLDVSYNIISNFSELEFLWSLSQLKELWLE 291
Query: 549 GH 544
G+
Sbjct: 292 GN 293
>At1g30760.1 68414.m03761 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 534
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -1
Query: 405 WGDGKDYTSHHVSWQLISLWEDNNVIFKILNTEYEMYLKLDVNVDSYG-DRKTWGS 241
W DGK + H+ W + K + Y Y LD+ ++ G D + WG+
Sbjct: 445 WQDGKTSEAKHMGWMREMYSYMEQYVSKSPRSAYVNYRDLDLGMNGKGSDAREWGN 500
>At1g10830.1 68414.m01244 sodium symporter-related contains five
transmembrane domains; Interpro IPR001991
Sodium:dicarboxylate symporter; EST gb|F13926 comes from
this gene
Length = 367
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 701 KLYKWLLIDVASAKTIFVLNAVWVFKSAG 787
KL W+ V +F+LN VW+ S G
Sbjct: 92 KLVSWVYFGVVLGVVLFILNVVWIDNSTG 120
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 29.1 bits (62), Expect = 3.8
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = -2
Query: 581 PCRSRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PG 402
P TS TRAT TSS TS S S ++ + ++ +T+ + ST G
Sbjct: 114 PTSRATSTTTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVTLTAARATRPTTSTDQQTTG 173
Query: 401 ETEKT--TPATMSAGNSSLFGKTTT 333
T MSA NS +++T
Sbjct: 174 SATSTRSNNRPMSAPNSKPGSRSST 198
>At1g76070.1 68414.m08834 expressed protein
Length = 272
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 514 AREVIFDDVLVALVPQLVRERHGVLDALRDEPRDDVATDVGAL 642
A ++ F +V LVP R R DA+ DEP + +G +
Sbjct: 52 ANKMFFSGPMVPLVPNAARVRRNKSDAVWDEPTSPKVSCIGQI 94
>At1g47410.1 68414.m05250 expressed protein identical to
hypothetical protein GB:AAD46041 GI:5668815 from
(Arabidopsis thaliana)
Length = 189
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 20 EGCHCHGWIMKP*YSGLSATVPLLPHTRRSPYES 121
E CHC GW GL LLP +SP ES
Sbjct: 146 EFCHCQGWPF-----GLGRKAALLPPLPKSPAES 174
>At1g28300.1 68414.m03473 transcriptional factor B3 family protein /
leafy cotyledon 2 (LEC2) nearly identical to LEAFY
COTYLEDON 2 [Arabidopsis thaliana] GI:15987516; contains
Pfam profile PF02362: B3 DNA binding domain
Length = 363
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 187 RPTAVPHREPGVPAGTEAGRERGLIRGPPCVGEQRDSRRQPRVLRL 50
+P + P +P T+ G E G + G PC+ ++R PR+ ++
Sbjct: 63 QPVYLSECYPQIPV-TQTGSEFGSLVGNPCLWQERGGFLDPRMTKM 107
>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
similar to SP|Q40374 Pathogenesis-related protein PR-1
precursor {Medicago truncatula}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 210
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 444 LDANVGEYNDRLTWGDGKDYTS 379
L + G Y + L WG G D+TS
Sbjct: 117 LTHSTGPYGENLFWGSGSDFTS 138
>At2g32040.1 68415.m03914 integral membrane transporter family
protein contains 9 transmembrane domains; contains Pfam
PF03092: BT1 family; contains TIGRFAMS TIGR00788:
folate/biopterin transporter; similar to high affinity
folic acid/methotrexate transporter 5 (GI:21898554)
[Leishmania tarentolae]
Length = 560
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 41 WIMKP*YSGLSATVPLLPHTRRS 109
W++KP Y +S +VPL + RRS
Sbjct: 173 WLVKPLYGFISDSVPLFGYRRRS 195
>At1g19360.1 68414.m02409 expressed protein
Length = 428
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -1
Query: 423 YNDRLTWGDGKDYTSHHVSWQLISLWE--DNNVIFKILNTEYEMYLKL 286
+N+ L + +YT+ H S +++ ++E ++ V+FK + +E+ K+
Sbjct: 341 FNEELFYPSHPEYTALHASKRVMDMYEFMNSKVLFKTVRKNHELKKKV 388
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,104,132
Number of Sequences: 28952
Number of extensions: 349286
Number of successful extensions: 1121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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