Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0033
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 147 1e-35
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 106 2e-23
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 75 6e-14
12_02_0659 - 21612325-21612328,21613164-21613199,21613279-216133... 30 2.1
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 30 2.8
06_01_0286 - 2094920-2097805 29 3.7
12_01_0485 - 3848721-3849227,3852019-3852369 29 6.5
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 29 6.5
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 147 bits (356), Expect = 1e-35
Identities = 94/235 (40%), Positives = 120/235 (51%), Gaps = 31/235 (13%)
Frame = +3
Query: 120 IRVAGASRQKHT--LPELPYEYNALEPVISREIMSLHHSKHH----ATYINNLNVAEEKL 281
+ A A+R T LP+LPY+Y ALEP IS EIM LHH KHH A Y L + +
Sbjct: 19 LAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAV 78
Query: 282 AQAQAKG--DIDTIINL--------APALKFNGGGHINHSIFW------------HNLSP 395
A+ A + + I P F G ++ F L
Sbjct: 79 AKGDAPAIVHLQSAIKFNGGGEAKSRPPYPFLAYGFLSFFFFVLFIAGDAGGGGSEELGG 138
Query: 396 NGG--KPSDVLTKAVEKDFGSWDNIKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQN 569
GG P L A+++DFGS++ + ++S A+QGSGW WL +K+ KKL + T N
Sbjct: 139 EGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTAN 198
Query: 570 QDPLQAT-TGLVPLFGIDVWEHAYYLQYKNVRADYVKAIFDVANWNDISQRYEKA 731
QDPL LVPL GIDVWEHAYYLQYKNVR DY+ I+ V NW + YE A
Sbjct: 199 QDPLVTKGANLVPLLGIDVWEHAYYLQYKNVRPDYLSNIWKVMNWKYAGEVYENA 253
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 106 bits (255), Expect = 2e-23
Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 28/217 (12%)
Frame = +3
Query: 165 LPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKG-DIDTIINLA---- 329
L + +ALEP IS+ + LH KH Y+++LN ++LA + G ++ +I A
Sbjct: 73 LVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNG 129
Query: 330 -PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNIKNQLSTASVAVQ 500
P ++N + NH FW ++ P GG P + + +EKDFGS+ N + + +++++
Sbjct: 130 NPLPEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLL 189
Query: 501 GSGWGWLGYNKQMKKLQIATCQNQ-------------------DPLQATTGLVPLFGIDV 623
GSGW WL ++ +K + QN D + L PL +D+
Sbjct: 190 GSGWVWLVLKRKERKFSVVHTQNAISPLALGDINNSIPSINLCDDIPCPLLLQPLINLDL 249
Query: 624 WEHAYYLQYKNVRADYVKAIFD-VANWNDISQRYEKA 731
WEHAYYL YK+ R YV D + +W+ ++ R +A
Sbjct: 250 WEHAYYLDYKDDRRMYVTNFIDHLVSWDTVTLRMMRA 286
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 75.4 bits (177), Expect = 6e-14
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 9/199 (4%)
Frame = +3
Query: 165 LPYEYNALEPVISREIMSLHHSKHHATYINNLNV----AE-EKLAQAQAKGDIDTIINLA 329
LPY +ALEP IS+E + H H ++ LN +E E ++ Q A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188
Query: 330 PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNIKNQLSTASVAVQG 503
P F I NH +W ++ P GG KP + L K + +DFGS+D + Q A+ G
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFG 248
Query: 504 SGWGWLGYNKQMKKLQIATCQNQDPLQATT-GLVPLFGIDVWEHAYYLQYKNVRADYVKA 680
SGW WL Y K ++ +++ P+ + G + + + + + R+DYV
Sbjct: 249 SGWVWLCY----KTSKLPHVKSRSPIPSDNYGRLVISKSPNAINPLVWGHSDRRSDYVST 304
Query: 681 IFD-VANWNDISQRYEKAL 734
+ + +W + R +KA+
Sbjct: 305 FLEKLVSWETVESRLKKAV 323
>12_02_0659 -
21612325-21612328,21613164-21613199,21613279-21613394,
21613983-21614567
Length = 246
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 632 VLPYIDSEERDQSSGGLQRILVLACSYLQFLH 537
+ PY + EE D +SG ++ VL C +LQF H
Sbjct: 53 IFPYYEHEEIDSASGEKKK--VLPCYFLQFQH 82
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 329 CKVDNGVDITFSLCLCEFLFSNV*IVDISRVMFAVMKTHDFTAND 195
C VD V + + CEF V + DISR++F K +F ND
Sbjct: 108 CTVDGHVKL-YRSPFCEFCDEWVEVADISRLLFKFYKGIEFGEND 151
>06_01_0286 - 2094920-2097805
Length = 961
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 153 TLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 320
+L L +N L +I + SLH H NNL+ + +Q Q GD D I
Sbjct: 807 SLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQLQTLGDEDPYI 862
>12_01_0485 - 3848721-3849227,3852019-3852369
Length = 285
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 518 AWLQQTNEEIANSYMPEPGSSAGHH-WIGPALR 613
AW E I + PG+ AG+H W+GP R
Sbjct: 134 AWKSWLEEHITATGKAPPGNVAGNHTWVGPPQR 166
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 773 LNWFNRFF*NYSLERFFISLRYIIPV 696
+ W +RFF + L+R+FIS R +IP+
Sbjct: 108 VRWLSRFF--FYLDRYFISRRSLIPL 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,279,936
Number of Sequences: 37544
Number of extensions: 525052
Number of successful extensions: 1419
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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