Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0028
(956 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.25
03_05_0340 + 23294044-23294166,23294395-23294640,23294907-232949... 30 2.4
01_01_0821 + 6399890-6400397,6400474-6401066 30 2.4
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635 30 3.1
02_01_0061 + 442288-442411,442445-445498,445630-446000 30 3.1
12_02_1205 - 26982163-26982702 29 5.5
05_07_0095 - 27659944-27660795,27660900-27661172,27661280-276613... 29 5.5
04_03_0996 + 21533874-21534469,21534963-21535041 29 5.5
02_05_0814 - 31970558-31971126,31971242-31971413 29 7.2
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 28 9.6
03_01_0184 - 1479520-1479649,1479889-1479938,1480519-1480683,148... 28 9.6
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 28 9.6
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 33.5 bits (73), Expect = 0.25
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +1
Query: 613 PPC*PRPTYS*CGSAIRLWPRSLSCRPSTCPPEP 714
PPC + CG IR WP + P CPP P
Sbjct: 221 PPCGCSGGHGNCGCGIRPWPPQVWPPPPVCPPPP 254
>03_05_0340 +
23294044-23294166,23294395-23294640,23294907-23294945,
23295439-23295805,23295904-23296136,23296496-23296756
Length = 422
Score = 30.3 bits (65), Expect = 2.4
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 703 GRSRAGSSMSEARVESLNRISCMLGAVSTA-GPSSSPRDGLSCCSETRQDSWHPLH 539
G RAGSS+ V+S + IS + SS R+G+S SE +DS P H
Sbjct: 230 GVDRAGSSLGRTDVKSASEISIKEEPIDQEENVSSRNRNGVSDESEEDEDSEGPAH 285
>01_01_0821 + 6399890-6400397,6400474-6401066
Length = 366
Score = 30.3 bits (65), Expect = 2.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 364 EQTDPTLKA*VCRWMTTSTQLYSWIISGLKRFRHQRSTSSFGLKRYALSWYCTSGTGLY 540
E++D ++ RWM + YSW I KR++ + S+F + + +SG G +
Sbjct: 39 EKSDKEMRFLFSRWMAQYGKAYSWPIEHEKRYQIWKDNSNF-IGSFRSETEISSGVGAF 96
>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
Length = 819
Score = 29.9 bits (64), Expect = 3.1
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Frame = -2
Query: 457 IVLGPRLSSCIVGSKSSSTGRLRPSMS-DPFAPFITAYNTLKINSKSVCSPSFSSIKY*G 281
++L P I + SS P+ S DP +P + A+ + + S + SPSFS +
Sbjct: 9 LLLSPTSKDLIAAASSSFPSPPSPTTSSDPASP-LDAFASDPVLS-AFLSPSFSPSDF-- 64
Query: 280 PQRTANSAKHSSSDPASGLTVSRWQLVESWAKHAQIHLI--IFPASPGYISTIRSV*SAS 107
SS+ +SGL SR + ++ + + HL + P +S + S+ SAS
Sbjct: 65 ----------SSAALSSGLAASRAEQLQEAIRLLRRHLRAEVLRRHPLLLSHLLSLRSAS 114
Query: 106 TNMQSLTTLAMFLFFIMSICSKHVT 32
++ SL + L +S+ S H++
Sbjct: 115 ASLSSLPSHLHLLSSHLSLLSSHLS 139
>02_01_0061 + 442288-442411,442445-445498,445630-446000
Length = 1182
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 699 LPARAGTTPGLTTSERQVRVLLRDIGGKACWDASALYFDPSGGQLEGG 842
+P R GT P L T + L DI S +Y D G QL GG
Sbjct: 241 IPTRFGTLPELKTLDLSNNALRGDIPPLLGSSPSFVYVDLGGNQLTGG 288
>12_02_1205 - 26982163-26982702
Length = 179
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 502 ALSWYCTSGTGLYGADANCP--VVFPSNTT 585
A+S+ C+SG GL D+ CP +FPS+ +
Sbjct: 133 AMSFSCSSGVGLTCRDSRCPDAYLFPSDNS 162
>05_07_0095 -
27659944-27660795,27660900-27661172,27661280-27661354,
27661683-27661837,27661935-27662051,27662148-27662487
Length = 603
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 445 GLKRFRHQRSTSSFGLKRYALSWYCTSGTGLYGADANCPV 564
GL RFR +RSTSS ALS +S L D P+
Sbjct: 11 GLDRFRWRRSTSSSSSSPLALSLSSSSAAALSDDDPGSPM 50
>04_03_0996 + 21533874-21534469,21534963-21535041
Length = 224
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 445 PRLSSCIVGSKSSSTGRLRPSMSDPFAPFITA 350
P +SS S SSS+ S+S PFAPF A
Sbjct: 39 PSVSSTSTSSSSSSSSSSSSSLSFPFAPFSPA 70
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 348 TTP*KSTAKVFVLHPSLPL-STEVRNVPQTRPSTAAVTRPVV*RCHGGS 205
TTP ST +PS P+ +T + P T P+T T P C GG+
Sbjct: 153 TTPNPSTPTPTTPYPSTPMPTTPYPSTPMTTPTTPYTT-PTSPACSGGA 200
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 459 PASTIDVKLWAQTICTQLVLYLGH-WPLW 542
P + V+LW+ + LV Y GH +P+W
Sbjct: 279 PYTLFQVRLWSTKLNANLVCYKGHNYPVW 307
>03_01_0184 -
1479520-1479649,1479889-1479938,1480519-1480683,
1481287-1481339,1481805-1481934,1482189-1482266,
1482583-1482642,1483428-1483480,1483574-1483895
Length = 346
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 737 RRQTWCSPGSGGQVEGRQLNERGQSRIAEPHQLY 636
RR +C+PG GG+V E+ + E + Y
Sbjct: 44 RRPLYCAPGGGGEVSAPPATEQQEQAAKEEEEEY 77
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 28.3 bits (60), Expect = 9.6
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +3
Query: 417 DPTIQLDNLGPKTIPASTIDVKLWAQTICTQLVLYLGHWPLWSGCQLSCRVSEQHDSPSL 596
+PTI L GP T+P + +W + +++ + + P C +S + P
Sbjct: 44 EPTIAL---GPVTLPTGCSEFLMWCGIMALKIITSIDNCPY--NCFVSAPSAPSASPPVA 98
Query: 597 GEELGPAVLTAP 632
+ PAV T P
Sbjct: 99 KGAVSPAVPTRP 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,143,627
Number of Sequences: 37544
Number of extensions: 610611
Number of successful extensions: 1864
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1863
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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