Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0028
(956 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036705-10|AAB95167.2| 612|Caenorhabditis elegans Hypothetical... 32 0.70
Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p... 30 2.1
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z81564-4|CAB04574.1| 432|Caenorhabditis elegans Hypothetical pr... 29 6.5
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 29 6.5
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 29 6.5
AF063007-2|AAC16433.1| 583|Caenorhabditis elegans Hypothetical ... 28 8.6
AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical ... 28 8.6
>AF036705-10|AAB95167.2| 612|Caenorhabditis elegans Hypothetical
protein F37C4.1 protein.
Length = 612
Score = 31.9 bits (69), Expect = 0.70
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 516 LYLGHWPLWSGCQLSCRVSEQHDSPSLGEELGPAVLTAPNIQ--LMRFSDSTLASLI 680
LYL HWP+++ +L+C ++ + +L + AV+T N + +R S +++ L+
Sbjct: 249 LYLIHWPIYAYWKLTCNGNQISLAVALASSIVFAVITYENFEKWYLRLSSTSIGLLV 305
>Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical protein
W08D2.7 protein.
Length = 1026
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 3 RTACPRLPSYVTCLLQMLMMKNKNIAKVVSDCILVLADYTDRIVEMY-PGLAGKIIRWI 176
+ A P+L + + L L + +N+AKV ++C + + + D+ V + PGL + +W+
Sbjct: 902 KCAAPKLATELQTCLSELHEQARNVAKVSNECKMEVME--DKYVSSFNPGLMDVVYQWV 958
>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +3
Query: 381 IEGLSLPVDDDFDPTIQLDNLGPKTIPASTIDVKLWAQTICTQ 509
++G + P+D + + D+LG +++ + ID ++W +CT+
Sbjct: 321 LDGFAGPMDISYQDFV--DSLGDQSVDSGWIDNRIWQYQVCTE 361
>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +3
Query: 381 IEGLSLPVDDDFDPTIQLDNLGPKTIPASTIDVKLWAQTICTQ 509
++G + P+D + + D+LG +++ + ID ++W +CT+
Sbjct: 321 LDGFAGPMDISYQDFV--DSLGDQSVDSGWIDNRIWQYQVCTE 361
>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical
protein F55G11.9 protein.
Length = 1431
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 42 LLQMLMMKNKNIAKVVSDCILVLADYTDRIVEMYPGLAGKIIRWICACLAQLSTS 206
L+ L +K KV +D +L + TD+ + L+G + R +C C+A + S
Sbjct: 543 LVNALKGGSKLTFKVEADSLLQQIELTDKRDTLAKNLSGGMKRKLCVCMAMIGGS 597
>Z81564-4|CAB04574.1| 432|Caenorhabditis elegans Hypothetical
protein K05C4.4 protein.
Length = 432
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 469 RSTSSFGLKRYALSWYCTSGTGLYGADANCPVVFPSNTTVRPWARSWA 612
RS + G+K++ +C + + NC V+ SN ++ +ARS+A
Sbjct: 322 RSINLEGIKKFTARDHCLNSLRNFPYLPNCTVLGLSNNNIKEFARSFA 369
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 519 YLGHWPLWSGCQLSC 563
Y G W WSGC +SC
Sbjct: 595 YWGDWTPWSGCSVSC 609
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 519 YLGHWPLWSGCQLSC 563
Y G W WSGC +SC
Sbjct: 595 YWGDWTPWSGCSVSC 609
>AF063007-2|AAC16433.1| 583|Caenorhabditis elegans Hypothetical
protein R119.7 protein.
Length = 583
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 445 PRLSSCIV-GSKSSSTGRLRPSMSDPFAPFITAYNTLKI 332
PR SS +V SKS +G ++ P P + AY+ L++
Sbjct: 321 PRTSSPVVYASKSKPSGHYDDKIASPHDPAVLAYSRLRV 359
>AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical
protein F37C4.2 protein.
Length = 686
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 516 LYLGHWPLWSGCQLSCRVSEQHDSPSLGEELGPAVLTAPNIQ--LMRFSDSTLASLI 680
LYL HWP+++ +L+C S + +L + AV+T + +R + +++ L+
Sbjct: 323 LYLIHWPIYAYWKLTCNGSHVLLALALASSIVLAVITYETFEKWYLRLTSTSIGILV 379
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,524,596
Number of Sequences: 27780
Number of extensions: 463402
Number of successful extensions: 1336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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