Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0023
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    26   7.8  

>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -3

Query: 496 VYSGYTSFFFPEVGTNDNNCPIISIG*IFREWTTPHE*QRRRTNK*GTLQI*FLTQFVDK 317
           ++  +  FF P    N +  PII+ G   R W+  H  Q+   +  G  QI  L    D 
Sbjct: 23  IHDPFIKFFSPS--RNSHKPPIINRGTYVRTWSIDHILQKFIESFDGKKQIISLGAGTDT 80

Query: 316 RFLRTI 299
           R  R I
Sbjct: 81  RVFRYI 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,228
Number of Sequences: 5004
Number of extensions: 76573
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)