Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0021
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   4.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   4.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   8.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 252 PDPITARPVPPDISASNLDIS 190
           P+P+ + P PP  S  ++ +S
Sbjct: 205 PEPVPSTPYPPPGSLGSMGVS 225


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 373 CRYCRVHKC 347
           C+YCR  KC
Sbjct: 138 CQYCRYQKC 146


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 373 CRYCRVHKCRLV 338
           C+ CR+ KC LV
Sbjct: 58  CKACRLRKCLLV 69


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 290 PPVLDGLARHPMC 252
           P  +DG  +HP+C
Sbjct: 144 PENVDGCQKHPLC 156


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 373 CRYCRVHKCRLV 338
           CR CR+ KC+ V
Sbjct: 92  CRACRLKKCQNV 103



 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 299 QAPPEPSPSIMAP 337
           Q PP P P I AP
Sbjct: 179 QVPPLPLPPIFAP 191


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 373 CRYCRVHKCRLV 338
           CR CR+ KC+ V
Sbjct: 92  CRACRLKKCQNV 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,534
Number of Sequences: 336
Number of extensions: 2432
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)