Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0016
(985 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 33 0.26
10_08_0928 + 21617977-21618157,21618260-21618378,21618653-216187... 33 0.35
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 32 0.81
11_06_0291 + 22008412-22012284 30 2.5
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 30 3.3
04_04_0683 - 27234137-27234486,27234645-27234756,27234889-272349... 30 3.3
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916... 30 3.3
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 29 4.3
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308... 29 4.3
11_03_0201 + 11578163-11578915 29 5.7
01_06_0133 - 26793335-26793380,26793696-26793907,26794009-267941... 29 5.7
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486... 29 7.5
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 29 7.5
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 28 9.9
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472... 28 9.9
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 33.5 bits (73), Expect = 0.26
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 608 SAETPSDSLDSNAEALQASATEDILTTLPTEPVVQTPP 721
S PS L N AL+++ T D TT+P P VQ PP
Sbjct: 379 SPSPPSSPLIENTSALRSTTTTD--TTIPRNPFVQPPP 414
>10_08_0928 +
21617977-21618157,21618260-21618378,21618653-21618774,
21618853-21619049,21619350-21619603,21619779-21619880,
21619976-21620404,21620611-21621369,21621586-21621771
Length = 782
Score = 33.1 bits (72), Expect = 0.35
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +2
Query: 602 YLSAETPSDSLDSNAEALQASATEDILTTLPTEPVVQTP-PLQEPAINETTRRTPKDDLS 778
YL+ T + D+N+ + AS T P+ ++ P+ + E DD++
Sbjct: 240 YLTESTSASVGDNNSNSPCASGQ----TPRPSNVLISDKAPMTSSPLQELMLSEDMDDVN 295
Query: 779 NDIETLLVEIRDVQTRLTDLPDESLEATEEVS 874
+++E L +E+R ++ + DES+ A++ V+
Sbjct: 296 SELEKLRLELRHIKGVCKLVQDESINASQHVT 327
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 31.9 bits (69), Expect = 0.81
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 701 PVVQTPPLQEPAINETTRRTP--KDDLSNDIETLLVEIRD-VQTRLTDLPDESLEATEEV 871
PV++ P + EP +++T P K LS D+ ++E+ D VQ L PD+ E
Sbjct: 327 PVMEDPDIHEPLVSQTPPAPPIEKRCLSFDLLIHVLEVVDPVQQLLDSPPDDPYNDDREA 386
Query: 872 SRR 880
RR
Sbjct: 387 LRR 389
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 30.3 bits (65), Expect = 2.5
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +2
Query: 251 KQNQPKEKPIDLNLKTDVKVDIENIRNDNKFWVEKHLYHDAECQYFLSMAKKSKPTSAVG 430
+Q+Q K +D+ + D NI + ++KH+ D E +S+ K++ G
Sbjct: 352 QQDQANNKAVDMYKLPEWNYD--NIMKIARK-LKKHMEADEELNEQISVEKRTTKQGGGG 408
Query: 431 DDFEVKDQNDKDRD 472
++ E KD+ D DR+
Sbjct: 409 ENKEEKDKGDGDRE 422
>06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 599 SYLSAETPSDSLDSNAEALQASATEDILTTLPTEPVVQ-TPPLQEPAINETTRRTP 763
S+ + TP + + +A + + ++ +D T +P+ + TPP+Q+P I P
Sbjct: 1297 SHENGTTPKEEVMLDASSKETTSPKDPATEVPSSASKEATPPVQDPVIEAVKEEPP 1352
>04_04_0683 -
27234137-27234486,27234645-27234756,27234889-27234961,
27235071-27235491,27236148-27236403
Length = 403
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/75 (22%), Positives = 41/75 (54%)
Frame = +2
Query: 590 DHSSYLSAETPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQEPAINETTRRTPKD 769
D+ SY+++E+ S S+ +A++ ++++T P + +VQT A T + +
Sbjct: 179 DNKSYITSESYSGSVSFVYSESKATSNQNVITEQPKKFLVQTSDNARRANLHTENQDTLE 238
Query: 770 DLSNDIETLLVEIRD 814
+ ++ + +L +E +D
Sbjct: 239 NANSPLVSLHMEGKD 253
>03_01_0009 -
89127-89924,90090-90518,90582-90716,91102-91382,
91634-91809,91899-92011,92157-92278,92375-92594
Length = 757
Score = 29.9 bits (64), Expect = 3.3
Identities = 23/92 (25%), Positives = 47/92 (51%)
Frame = +2
Query: 602 YLSAETPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQEPAINETTRRTPKDDLSN 781
YL+ T S D + ++ TE ++ P+E L++ ++ + KD +S
Sbjct: 254 YLNGST-SIYPDKDRRVNSSTGTE---SSKPSELKGSNEVLRQESLLQGMLSDNKDHIST 309
Query: 782 DIETLLVEIRDVQTRLTDLPDESLEATEEVSR 877
++E L +E+R +Q + + DES +A+ + S+
Sbjct: 310 ELEKLRLELRLIQGKHKLVQDESDDASRQASK 341
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 29.5 bits (63), Expect = 4.3
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Frame = +2
Query: 587 KDHSSYLSAETPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQEPAINETTRRTPK 766
K S L T S + +++ A + ++ T P+ V+TP ++PA +E +
Sbjct: 822 KIQKSGLRDLTTSKTPEASISAALSRDSKLFERTAPSTYCVKTPYRKDPADSEAVLAAAR 881
Query: 767 DDL---SNDIETLLVEIRDVQTRLTDLPDESLEATEEVSRRESNFNQVRRSSRAVGAEDH 937
+ + N I +DV D E +A ++ E N + + V A+D
Sbjct: 882 EKIRVFQNTISECEEVEKDVDDAERDEDSECDDADDDPDGDEVNIEEKDVKTSLVKAQDG 941
Query: 938 GVPPEV 955
G+P V
Sbjct: 942 GMPTAV 947
>03_02_0924 +
12429764-12430120,12430562-12430637,12430803-12430849,
12431850-12431962,12432056-12432129,12432258-12432353,
12432440-12432559,12432660-12432893,12433486-12433634,
12434145-12434301,12434387-12434542,12435359-12435735,
12435871-12436020,12437071-12437253,12437440-12437643,
12437869-12437975,12438253-12438406,12438796-12438917,
12439541-12439787
Length = 1040
Score = 29.5 bits (63), Expect = 4.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 327 VTITNSGLKNIYTMTPNANISFQWPKNLNQHQPLEMILK 443
+ +T+SGLKN+Y + + +Q+ K L Q +P E I K
Sbjct: 413 IRLTDSGLKNLYEV---ISAVYQYIKLLKQSEPQEWIFK 448
>11_03_0201 + 11578163-11578915
Length = 250
Score = 29.1 bits (62), Expect = 5.7
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -3
Query: 665 RKLEEPPRLNQANQKEF---RRSSKSYDLSNYIYRRVSP 558
R + E R+ Q+ QK + RR ++++ +Y+Y RV+P
Sbjct: 73 RTIRERLRIAQSRQKSYTDNRRRELTFEVGDYVYLRVTP 111
>01_06_0133 -
26793335-26793380,26793696-26793907,26794009-26794134,
26794258-26794335,26794857-26795014,26795230-26795278,
26795369-26795414,26795527-26795654,26796154-26796237,
26796317-26796409,26796505-26796549,26796792-26796851
Length = 374
Score = 29.1 bits (62), Expect = 5.7
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +2
Query: 761 PKDDLSNDIETLLVEIRDVQTRLTDLPDESLEATEEVSRRESNFNQVRRSSRAVGAEDHG 940
P + D+ T + R + T +T++P + + ++ R++SN RRS AE
Sbjct: 194 PVTAIKPDVSTAS-DFRVIATPVTEVPTKDDKESKRERRKQSNRESARRSRLRKQAETEE 252
Query: 941 VPPEVEVQT 967
+ +VE+ T
Sbjct: 253 LARKVELLT 261
>05_01_0554 +
4856131-4856605,4858051-4858098,4860611-4860792,
4861409-4863136
Length = 810
Score = 28.7 bits (61), Expect = 7.5
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 11 KSNKIETSGIIENVEREETIEPELSDTLSDAVPI 112
K++++E+ G+ NVE ++ E+++ S AVPI
Sbjct: 433 KASRLESEGVEVNVELQKEEATEVNEARSQAVPI 466
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 28.7 bits (61), Expect = 7.5
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 767 DDLSNDIETLLVEIRDVQTRLTDLPDESLEATEEVSRRESNFNQVRRSSRAV 922
+ +++ E + ++ V L L DE EAT E RRE ++++ + A+
Sbjct: 646 EHINSQKEMINTKLEHVAVELQKLKDERKEATLERERREQELSEIKGTIEAL 697
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 28.3 bits (60), Expect = 9.9
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 617 TPSDSLDSNAEALQASATEDILTTLPTEPVVQTPPLQEPA 736
TPS S+ + A A A + I TTLP P+ Q PL+ P+
Sbjct: 436 TPSPSVPNTA-APPAPLSPLICTTLPGSPLPQISPLRGPS 474
>01_06_0864 -
32546696-32546803,32546881-32546961,32547134-32547250,
32548264-32548338,32548618-32548680,32549122-32549187,
32549254-32549325,32549403-32549504,32549588-32549765,
32549871-32549926,32551578-32551688,32551797-32551865,
32551960-32552068,32552176-32552327,32552398-32552475,
32554257-32554379,32555527-32555646,32555729-32555809,
32555881-32556027,32556112-32556190,32557223-32557297,
32558004-32558113,32558984-32559082,32559700-32559815,
32559914-32560022,32560098-32560229,32560389-32560591,
32561428-32561585,32561668-32561797,32562529-32562607,
32562806-32562829
Length = 1073
Score = 28.3 bits (60), Expect = 9.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 281 DLNLKTDVKVDIENIRNDNKFWVEKHLYHDAE 376
D+ D V++E + DNK+ EKH DA+
Sbjct: 289 DVYASFDKYVEVERLEGDNKYQSEKHGLQDAK 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,395,599
Number of Sequences: 37544
Number of extensions: 425193
Number of successful extensions: 1470
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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