Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0015
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83316-9|CAN99655.1| 250|Caenorhabditis elegans Hypothetical pr... 173 1e-43
Z83316-6|CAD30429.2| 491|Caenorhabditis elegans Hypothetical pr... 173 1e-43
Z83316-5|CAD30428.2| 345|Caenorhabditis elegans Hypothetical pr... 173 1e-43
AC006780-5|AAF60646.1| 287|Caenorhabditis elegans Hypothetical ... 100 9e-22
AC006780-4|AAO21411.1| 312|Caenorhabditis elegans Hypothetical ... 100 9e-22
U29536-5|AAA68794.1| 246|Caenorhabditis elegans Hypothetical pr... 80 1e-15
Z81532-3|CAC70088.2| 659|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z73098-12|CAA97339.1| 452|Caenorhabditis elegans Hypothetical p... 38 0.005
AF068708-5|AAK68200.1| 628|Caenorhabditis elegans P granule abn... 30 1.4
AF068708-4|AAC17755.1| 693|Caenorhabditis elegans P granule abn... 30 1.4
AC024844-8|AAK29951.1| 421|Caenorhabditis elegans Hypothetical ... 30 1.4
AB120729-1|BAC87886.1| 693|Caenorhabditis elegans PGL-3 protein. 30 1.4
U88172-11|AAB42257.1| 390|Caenorhabditis elegans Hypothetical p... 30 1.9
U88172-10|AAM97988.1| 437|Caenorhabditis elegans Hypothetical p... 30 1.9
AF016426-1|AAB65347.2| 254|Caenorhabditis elegans Hypothetical ... 29 3.3
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 4.4
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 28 7.7
>Z83316-9|CAN99655.1| 250|Caenorhabditis elegans Hypothetical
protein B0379.4c protein.
Length = 250
Score = 173 bits (421), Expect = 1e-43
Identities = 79/106 (74%), Positives = 91/106 (85%)
Frame = +2
Query: 404 KSVMVIDLDETLVHSSFKPINNAHFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGELY*CV 583
K +VIDLDETLVHSSFKP+ N FV+PVEIDG HQVYVLKRP+VDEFL + GE + C+
Sbjct: 70 KKCLVIDLDETLVHSSFKPVKNPDFVIPVEIDGVEHQVYVLKRPYVDEFLAKVGEHFECI 129
Query: 584 LFTASLAKYADPVADLLDRWGVFRARLFRDSCVFHRGNYVKDLNSL 721
LFTASLAKYADPVADLLD+ VFR RLFR++CVFH+GNYVKDL+ L
Sbjct: 130 LFTASLAKYADPVADLLDKKRVFRGRLFREACVFHKGNYVKDLSRL 175
>Z83316-6|CAD30429.2| 491|Caenorhabditis elegans Hypothetical
protein B0379.4b protein.
Length = 491
Score = 173 bits (421), Expect = 1e-43
Identities = 79/106 (74%), Positives = 91/106 (85%)
Frame = +2
Query: 404 KSVMVIDLDETLVHSSFKPINNAHFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGELY*CV 583
K +VIDLDETLVHSSFKP+ N FV+PVEIDG HQVYVLKRP+VDEFL + GE + C+
Sbjct: 311 KKCLVIDLDETLVHSSFKPVKNPDFVIPVEIDGVEHQVYVLKRPYVDEFLAKVGEHFECI 370
Query: 584 LFTASLAKYADPVADLLDRWGVFRARLFRDSCVFHRGNYVKDLNSL 721
LFTASLAKYADPVADLLD+ VFR RLFR++CVFH+GNYVKDL+ L
Sbjct: 371 LFTASLAKYADPVADLLDKKRVFRGRLFREACVFHKGNYVKDLSRL 416
>Z83316-5|CAD30428.2| 345|Caenorhabditis elegans Hypothetical
protein B0379.4a protein.
Length = 345
Score = 173 bits (421), Expect = 1e-43
Identities = 79/106 (74%), Positives = 91/106 (85%)
Frame = +2
Query: 404 KSVMVIDLDETLVHSSFKPINNAHFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGELY*CV 583
K +VIDLDETLVHSSFKP+ N FV+PVEIDG HQVYVLKRP+VDEFL + GE + C+
Sbjct: 165 KKCLVIDLDETLVHSSFKPVKNPDFVIPVEIDGVEHQVYVLKRPYVDEFLAKVGEHFECI 224
Query: 584 LFTASLAKYADPVADLLDRWGVFRARLFRDSCVFHRGNYVKDLNSL 721
LFTASLAKYADPVADLLD+ VFR RLFR++CVFH+GNYVKDL+ L
Sbjct: 225 LFTASLAKYADPVADLLDKKRVFRGRLFREACVFHKGNYVKDLSRL 270
>AC006780-5|AAF60646.1| 287|Caenorhabditis elegans Hypothetical
protein Y47D9A.2a protein.
Length = 287
Score = 100 bits (240), Expect = 9e-22
Identities = 53/112 (47%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Frame = +2
Query: 389 TRTCIKSVMVIDLDETLVHSSFKPINNAHFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGE 568
TR+ + +V+DLDETLVH S P++NA V PV +QVYV RPH+ FL R +
Sbjct: 59 TRSTPEYTLVLDLDETLVHCSLTPLDNATMVFPVVFQNITYQVYVRLRPHLRTFLSRMAK 118
Query: 569 LY*CVLFTASLAKYADPVADLLD-RWGVFRARLFRDSCVFHRGNYVKDLNSL 721
+ ++FTAS YA+ + D+LD R R RLFR+ CV GNYVKDL L
Sbjct: 119 TFEIIIFTASKKVYANKLCDILDPRKNHIRHRLFREHCVCVFGNYVKDLTIL 170
>AC006780-4|AAO21411.1| 312|Caenorhabditis elegans Hypothetical
protein Y47D9A.2b protein.
Length = 312
Score = 100 bits (240), Expect = 9e-22
Identities = 53/112 (47%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Frame = +2
Query: 389 TRTCIKSVMVIDLDETLVHSSFKPINNAHFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGE 568
TR+ + +V+DLDETLVH S P++NA V PV +QVYV RPH+ FL R +
Sbjct: 59 TRSTPEYTLVLDLDETLVHCSLTPLDNATMVFPVVFQNITYQVYVRLRPHLRTFLSRMAK 118
Query: 569 LY*CVLFTASLAKYADPVADLLD-RWGVFRARLFRDSCVFHRGNYVKDLNSL 721
+ ++FTAS YA+ + D+LD R R RLFR+ CV GNYVKDL L
Sbjct: 119 TFEIIIFTASKKVYANKLCDILDPRKNHIRHRLFREHCVCVFGNYVKDLTIL 170
>U29536-5|AAA68794.1| 246|Caenorhabditis elegans Hypothetical
protein F45E12.1 protein.
Length = 246
Score = 80.2 bits (189), Expect = 1e-15
Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Frame = +2
Query: 395 TCIKSVMVIDLDETLVHS--------SFKPINNAHFVVPVEIDGAVHQVYVLKRPHVDEF 550
T + ++V+DLDETL+HS + KP + F + V ID + V +RPHVD F
Sbjct: 54 TVKRKILVLDLDETLIHSHHDGVLRQTVKPGTPSDFTIRVVIDRHPVKFSVHERPHVDYF 113
Query: 551 LRRCGELY*CVLFTASLAKYADPVADLLDRW-GVFRARLFRDSCVFHRGNYVKDLNSL 721
L + Y V+FTAS+ Y VAD LDR G+ + R FR C G Y KDL+++
Sbjct: 114 LSVVSQWYELVVFTASMEVYGTSVADRLDRGRGILKRRYFRQHCTMEVGGYTKDLSAI 171
>Z81532-3|CAC70088.2| 659|Caenorhabditis elegans Hypothetical
protein F36F2.6 protein.
Length = 659
Score = 47.2 bits (107), Expect = 1e-05
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Frame = +2
Query: 404 KSVMVIDLDETLVHSSFKPIN-NAHFVVPVEIDGAVHQVYVLK-RPHVDEFLRRCGELY* 577
K V+++DLD+T++H+S KP+ + + +VY K RPH EFL + +Y
Sbjct: 143 KLVLLVDLDQTIIHTSDKPMTVDTENHKDITKYNLHSRVYTTKLRPHTTEFLNKMSNMYE 202
Query: 578 CVLFTASLAKYADPVADLLDRWG-VFRARLFRDSCVF---HRGNYVKDL 712
+ T +YA +A +LD +F R+ +F H+ N +K L
Sbjct: 203 MHIVTYGQRQYAHRIAQILDPDARLFEQRILSRDELFSAQHKTNNLKAL 251
>Z73098-12|CAA97339.1| 452|Caenorhabditis elegans Hypothetical
protein T21C9.12 protein.
Length = 452
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 524 LKRPHVDEFLRRCG-ELY*CVLFTASLAKYADPVADLLDRWGVFRARLFRDSCVFHRGNY 700
LKRP +D FL G + V++++ A PV D D +LFRD + G++
Sbjct: 272 LKRPALDYFLDVIGYPNFEVVIYSSESMMTAAPVVDSFDPKQRIMYKLFRDCTKYMNGHH 331
Query: 701 VKDLNSL 721
VKDL+ L
Sbjct: 332 VKDLSKL 338
>AF068708-5|AAK68200.1| 628|Caenorhabditis elegans P granule
abnormality protein 3,isoform b protein.
Length = 628
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +1
Query: 82 SIITQVSRDDEQLNNYGPDRGSSPGVQHNEGDGTPVSGSTPLGGKKSSGTG 234
S + + +D + P G GD TPV +TP+ K SG G
Sbjct: 492 STLEEEQEEDTTITKVSPQPQERTGTAWGSGDATPVPLATPVNEYKVSGFG 542
>AF068708-4|AAC17755.1| 693|Caenorhabditis elegans P granule
abnormality protein 3,isoform a protein.
Length = 693
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +1
Query: 82 SIITQVSRDDEQLNNYGPDRGSSPGVQHNEGDGTPVSGSTPLGGKKSSGTG 234
S + + +D + P G GD TPV +TP+ K SG G
Sbjct: 557 STLEEEQEEDTTITKVSPQPQERTGTAWGSGDATPVPLATPVNEYKVSGFG 607
>AC024844-8|AAK29951.1| 421|Caenorhabditis elegans Hypothetical
protein Y65B4A.9 protein.
Length = 421
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 440 VHSSFKPINNAHFVVPVEIDGAVHQVYVL 526
+H KP +HF + EIDG HQVY+L
Sbjct: 141 IHRDIKP---SHFCIGREIDGQHHQVYLL 166
>AB120729-1|BAC87886.1| 693|Caenorhabditis elegans PGL-3 protein.
Length = 693
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +1
Query: 82 SIITQVSRDDEQLNNYGPDRGSSPGVQHNEGDGTPVSGSTPLGGKKSSGTG 234
S + + +D + P G GD TPV +TP+ K SG G
Sbjct: 557 STLEEEQEEDTTITKVSPQPQERTGTAWGSGDATPVPLATPVNEYKVSGFG 607
>U88172-11|AAB42257.1| 390|Caenorhabditis elegans Hypothetical
protein ZK354.2a protein.
Length = 390
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 440 VHSSFKPINNAHFVVPVEIDGAVHQVYVL 526
+H KP +HF + E+DG HQVY+L
Sbjct: 141 IHRDIKP---SHFCIGREVDGQHHQVYLL 166
>U88172-10|AAM97988.1| 437|Caenorhabditis elegans Hypothetical
protein ZK354.2b protein.
Length = 437
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 440 VHSSFKPINNAHFVVPVEIDGAVHQVYVL 526
+H KP +HF + E+DG HQVY+L
Sbjct: 141 IHRDIKP---SHFCIGREVDGQHHQVYLL 166
>AF016426-1|AAB65347.2| 254|Caenorhabditis elegans Hypothetical
protein W07B8.3 protein.
Length = 254
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 565 AAPPQELVDMRPLQNVNLMDRTVDFYRHH 479
+ PP+ +M P ++ + MD D YRHH
Sbjct: 109 SVPPERSYNMYPQRSPSSMDSAPDTYRHH 137
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 236 PPVPLDFFPPKGVDPETGVPSPSLCCTPGDEPLSGP 129
PP P F PP + P P P + C P P+ P
Sbjct: 58 PPCPAQFCPPPPICPPP--PPPPMPCPPPPPPMPRP 91
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 242 KKPPVPLDFFPPKGVDPETGVPSPSLCCTPGDEPL 138
KKPP+P + D ETG S +L T PL
Sbjct: 1578 KKPPIPPPNIRDRERDRETGTSSSALPTTTASNPL 1612
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,912,989
Number of Sequences: 27780
Number of extensions: 380580
Number of successful extensions: 1097
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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