Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0015
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11860.3 68418.m01388 NLI interacting factor (NIF) family pro... 108 3e-24
At5g11860.2 68418.m01387 NLI interacting factor (NIF) family pro... 108 3e-24
At5g11860.1 68418.m01386 NLI interacting factor (NIF) family pro... 108 3e-24
At1g29780.1 68414.m03641 NLI interacting factor (NIF) family pro... 98 6e-21
At1g29770.1 68414.m03640 NLI interacting factor (NIF) family pro... 96 2e-20
At5g46410.1 68418.m05712 NLI interacting factor (NIF) family pro... 90 1e-18
At5g45700.1 68418.m05618 NLI interacting factor (NIF) family pro... 89 3e-18
At3g55960.1 68416.m06218 NLI interacting factor (NIF) family pro... 49 3e-06
At5g23470.1 68418.m02754 NLI interacting factor (NIF) family pro... 34 0.11
At3g15330.1 68416.m01935 NLI interacting factor (NIF) family pro... 33 0.14
At2g02290.1 68415.m00167 NLI interacting factor (NIF) family pro... 33 0.25
At4g18140.1 68417.m02696 NLI interacting factor (NIF) family pro... 31 0.58
At3g17550.1 68416.m02241 NLI interacting factor (NIF) family pro... 31 0.77
At5g54210.1 68418.m06753 NLI interacting factor (NIF) family pro... 30 1.3
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 30 1.3
At1g20320.1 68414.m02536 NLI interacting factor (NIF) family pro... 30 1.3
At3g22380.1 68416.m02825 expressed protein 30 1.8
At5g58000.1 68418.m07256 phosphatase-related weak similarity to ... 29 2.3
At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3) i... 29 2.3
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 29 4.1
At1g43610.1 68414.m05006 NLI interacting factor (NIF) family pro... 29 4.1
At1g43600.1 68414.m05005 NLI interacting factor (NIF) family pro... 29 4.1
At3g19600.1 68416.m02485 NLI interacting factor (NIF) family pro... 28 5.4
At3g46240.1 68416.m05005 protein kinase-related similar to light... 28 7.2
At2g25730.1 68415.m03084 expressed protein 27 9.5
>At5g11860.3 68418.m01388 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 305
Score = 108 bits (260), Expect = 3e-24
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Frame = +2
Query: 389 TRTCIKSVMVIDLDETLVHSSFKPINNAHFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGE 568
TR+C +V+DLDETLVHS+ +P F PV + H VYV RPH+ EF+ R
Sbjct: 106 TRSCPPISLVLDLDETLVHSTLEPCGEVDFTFPVNFNEEEHMVYVRCRPHLKEFMERVSR 165
Query: 569 LY*CVLFTASLAKYADPVADLLD-RWGVFRARLFRDSCVFHRGNYVKDLNSL 721
L+ ++FTAS + YA+ + ++LD + +FR R++RDSCVF GNY+KDL+ L
Sbjct: 166 LFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVYRDSCVFFDGNYLKDLSVL 217
>At5g11860.2 68418.m01387 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 305
Score = 108 bits (260), Expect = 3e-24
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Frame = +2
Query: 389 TRTCIKSVMVIDLDETLVHSSFKPINNAHFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGE 568
TR+C +V+DLDETLVHS+ +P F PV + H VYV RPH+ EF+ R
Sbjct: 106 TRSCPPISLVLDLDETLVHSTLEPCGEVDFTFPVNFNEEEHMVYVRCRPHLKEFMERVSR 165
Query: 569 LY*CVLFTASLAKYADPVADLLD-RWGVFRARLFRDSCVFHRGNYVKDLNSL 721
L+ ++FTAS + YA+ + ++LD + +FR R++RDSCVF GNY+KDL+ L
Sbjct: 166 LFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVYRDSCVFFDGNYLKDLSVL 217
>At5g11860.1 68418.m01386 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 305
Score = 108 bits (260), Expect = 3e-24
Identities = 52/112 (46%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Frame = +2
Query: 389 TRTCIKSVMVIDLDETLVHSSFKPINNAHFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGE 568
TR+C +V+DLDETLVHS+ +P F PV + H VYV RPH+ EF+ R
Sbjct: 106 TRSCPPISLVLDLDETLVHSTLEPCGEVDFTFPVNFNEEEHMVYVRCRPHLKEFMERVSR 165
Query: 569 LY*CVLFTASLAKYADPVADLLD-RWGVFRARLFRDSCVFHRGNYVKDLNSL 721
L+ ++FTAS + YA+ + ++LD + +FR R++RDSCVF GNY+KDL+ L
Sbjct: 166 LFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVYRDSCVFFDGNYLKDLSVL 217
>At1g29780.1 68414.m03641 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 221
Score = 97.9 bits (233), Expect = 6e-21
Identities = 51/108 (47%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Frame = +2
Query: 395 TCIKSVMVIDLDETLVHSSFKPINNAH-FVVPVEIDGAVHQVYVLKRPHVDEFLRRCGEL 571
T +K +++DLDETLVH++ H F+V V+++ + ++V+KRP V EFL R GE
Sbjct: 46 TNMKRTIILDLDETLVHATTHLPGVKHDFMVMVKMEREIMPIFVVKRPGVTEFLERLGEN 105
Query: 572 Y*CVLFTASLAKYADPVADLLDRWGVFRARLFRDSCVFHRGNYVKDLN 715
Y V+FTA L +YA V D LD+ GV RL+RDSC G YVKDL+
Sbjct: 106 YKVVVFTAGLEEYASQVLDKLDKNGVISQRLYRDSCTEVNGKYVKDLS 153
>At1g29770.1 68414.m03640 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 278
Score = 95.9 bits (228), Expect = 2e-20
Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Frame = +2
Query: 404 KSVMVIDLDETLVHSSFKP-IN-NAHFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGELY* 577
K + +DLDETLVHS+ +P I N F+V ++I+GAV ++V+KRP V EFL R + Y
Sbjct: 102 KRTIFLDLDETLVHSTMEPPIRVNVDFMVRIKIEGAVIPMFVVKRPGVTEFLERISKNYR 161
Query: 578 CVLFTASLAKYADPVADLLDRWGVFRARLFRDSCVFHRGNYVKDLN 715
+FTA L +YA V D LD+ V RL+RDSC G Y KDL+
Sbjct: 162 VAIFTAGLPEYASQVLDKLDKNRVISQRLYRDSCTEVNGRYAKDLS 207
>At5g46410.1 68418.m05712 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 453
Score = 90.2 bits (214), Expect = 1e-18
Identities = 52/108 (48%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Frame = +2
Query: 404 KSV-MVIDLDETLVHSSFKPINNAHFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGELY*C 580
KSV +V+DLDETLVHS+ + N A F V + + VYV +RPH+ FL R GEL+
Sbjct: 279 KSVTLVLDLDETLVHSTLESCNVADFSFRVFFNMQENTVYVRQRPHLYRFLERVGELFHV 338
Query: 581 VLFTASLAKYADPVADLLDRWGVF-RARLFRDSCVFHRGNYVKDLNSL 721
V+FTAS + YA + D+LD G F R +RDSC+ G Y KDL L
Sbjct: 339 VIFTASHSIYASQLLDILDPDGKFISQRFYRDSCILLDGIYTKDLTVL 386
>At5g45700.1 68418.m05618 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 272
Score = 89.0 bits (211), Expect = 3e-18
Identities = 52/105 (49%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Frame = +2
Query: 404 KSVMVIDLDETLVHSSF-KPINNAHFVVPVEIDGAVHQVYVLKRPHVDEFLRRCGELY*C 580
K +V+DLDETLVHSS KP FVV +IDG + +V+KRP VDEFL++ GE Y
Sbjct: 97 KKTIVLDLDETLVHSSMEKPEVPYDFVVNPKIDGQILTFFVIKRPGVDEFLKKIGEKYQI 156
Query: 581 VLFTASLAKYADPVADLLD-RWGVFRARLFRDSCVFHRGNYVKDL 712
V+FTA L +YA V D LD V +RD+C G VKDL
Sbjct: 157 VVFTAGLREYASLVLDKLDPERRVISRSFYRDACSEIDGRLVKDL 201
>At3g55960.1 68416.m06218 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 305
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +2
Query: 491 EIDGA--VHQVYVLKRPHVDEFLRRCGELY*CVLFTASLAKYADPVADLLDRWGVFRARL 664
E DG ++ V V +RP + EFL + E +LFTA L YA P+ D +D V RL
Sbjct: 143 EYDGKPKINYVTVFERPGLHEFLEQLSEFADLILFTAGLEGYARPLVDRIDTRKVLTNRL 202
Query: 665 FRDSCVFHR-GNYVKDLNS 718
+R S V + ++VKDL S
Sbjct: 203 YRPSTVSTQYRDHVKDLLS 221
>At5g23470.1 68418.m02754 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 302
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Frame = +2
Query: 413 MVIDLDETLVHS---SFKPINNAHFVVPVEI--------DGAVHQVYVLKRPHVDEFLRR 559
+V+DLD+TL+H+ S + + + VE G + + RP V +FL+
Sbjct: 89 LVLDLDQTLIHTIKTSLLYESEKYIIEEVESRKDIKRFNTGFPEESLIKLRPFVHQFLKE 148
Query: 560 CGELY*CVLFTASLAKYADPVADLLD 637
C E++ ++T YA V +++D
Sbjct: 149 CNEMFSMYVYTKGGYDYARLVLEMID 174
>At3g15330.1 68416.m01935 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 305
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Frame = +2
Query: 413 MVIDLDETLVHS-SFKPINNAH-FVVPVEIDGA------VHQVYVLKRPHVDEFLRRCGE 568
+V+DLD TL+HS ++ A +++ E G+ + V RP V+EFL+ +
Sbjct: 79 LVLDLDHTLIHSMKTSNLSKAEKYLIKEEKSGSRKDLRKYNNRLVKFRPFVEEFLKEANK 138
Query: 569 LY*CVLFTASLAKYADPVADLLD 637
L+ +T + Y V ++D
Sbjct: 139 LFTMTAYTKGGSTYGQAVVRMID 161
>At2g02290.1 68415.m00167 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 302
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Frame = +2
Query: 413 MVIDLDETLVHS-SFKPINNAHFVVPVEID----------GAVHQVYVLKRPHVDEFLRR 559
+V+DLD TLVH+ ++ + + E++ G + + R V +FL+
Sbjct: 89 LVLDLDHTLVHTIKVSQLSESEKYITEEVESRKDLRRFNTGFPEESLIKLRSFVHQFLKE 148
Query: 560 CGELY*CVLFTASLAKYADPVADLLD 637
C E++ ++T YA V +++D
Sbjct: 149 CNEMFSLYVYTKGGYDYAQLVLEMID 174
>At4g18140.1 68417.m02696 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 312
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 626 DLLDRWGVFRA-RLFRDSCVFHRGNYVKDLNSL 721
D+LD G F + R +RDSC+ G Y KDL L
Sbjct: 208 DILDPDGKFVSQRFYRDSCILSDGIYTKDLTVL 240
>At3g17550.1 68416.m02241 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 296
Score = 31.1 bits (67), Expect = 0.77
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Frame = +2
Query: 413 MVIDLDETLVHS-SFKPINNAHFVVPVEIDGAVHQV-------YVLK-RPHVDEFLRRCG 565
+V+DLD TL+HS ++ + E + Y+ K RP V EFL+
Sbjct: 88 LVLDLDHTLLHSIRVSLLSETEKCLIEEACSTTREDLWKLDSDYLTKLRPFVHEFLKEAN 147
Query: 566 ELY*CVLFTASLAKYADPVADLLD 637
EL+ ++T YA+ + L+D
Sbjct: 148 ELFTMYVYTMGTRVYAESLLKLID 171
>At5g54210.1 68418.m06753 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 306
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Frame = +2
Query: 413 MVIDLDETLVHSSF--KPINNAHFVVPVE--------IDGAVHQVYVLK-RPHVDEFLRR 559
+V+DLD TL+H+ +++ E ++G +++K RP V EFL+
Sbjct: 91 LVLDLDHTLLHTVMISNLTKEETYLIEEEDSREDLRRLNGGYSSEFLIKLRPFVHEFLKE 150
Query: 560 CGELY*CVLFTASLAKYADPVADLLD 637
+++ ++T YA V +L+D
Sbjct: 151 ANKMFSMYVYTMGDRDYAMNVLNLID 176
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 124 NYGPDRGSSPGVQHNEGDGTPVSGSTPLGGKKSSGTGG 237
N GP+ G G G G P+SG P G + G GG
Sbjct: 377 NGGPNGGKKGGGGGGGGGGGPMSGGLPPGFRPMGGGGG 414
>At1g20320.1 68414.m02536 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 342
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Frame = +2
Query: 413 MVIDLDETLVHS-SFKPINNAHFVVPVEID------GAVHQVYVLKRPHVDEFLRRCGEL 571
+V+DLD TL+HS ++ + E D ++ + RP V EFL+ E+
Sbjct: 79 LVLDLDHTLLHSIMISRLSEGEKYLLGESDFREDLWTLDREMLIKLRPFVHEFLKEANEI 138
Query: 572 Y*CVLFTASLAKYADPVADLLD 637
+ ++T YA V +D
Sbjct: 139 FSMYVYTMGNRDYAQAVLKWID 160
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -2
Query: 366 SGGMF--RHDQQGRRSPAVDTIGAIASGRSLASATAPTAQQRSQEAAG 229
SGG + RH QQ +PAV GA+ + A A A + + + G
Sbjct: 1465 SGGYYIQRHQQQSGSAPAVPVTGAVTATSDPAKAIAAASAANNMKGGG 1512
>At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD
phosphatase-like 3 [Arabidopsis thaliana] GI:22212705;
contains Pfam profiles PF02453: Reticulon, PF00533:
BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting
factor
Length = 1011
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 512 QVYVLKRPHVDEFLRRCGELY*CVLFTASLAKYADPVADLLDRWGVF 652
Q+ RP V FL+ E++ ++T YA +A LLD G +
Sbjct: 745 QMMTKLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEY 791
>At2g33540.1 68415.m04111 CTD phosphatase-like protein 3 (CPL3)
identical to CTD phosphatase-like 3 (CPL3) [Arabidopsis
thaliana] GI:22212705; contains Pfam profile PF03031: NLI
interacting factor
Length = 1241
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 530 RPHVDEFLRRCGELY*CVLFTASLAKYADPVADLLDRWGV-FRARL 664
RP + FL + +LY L+T YA +A LLD GV F R+
Sbjct: 983 RPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKGVLFNGRV 1028
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 31 LSPFVLRPKTNV*MDASSIITQVSRDDEQLNNYGPDRGSSPGVQHNEGD 177
++ FV P+ N + + +I ++ + +E+ N D G G H E D
Sbjct: 588 IAEFVQNPQVN--REVAEVIEKLKKQEEEENAKSLDEGQCSGTSHEEED 634
>At1g43610.1 68414.m05006 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 255
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Frame = +2
Query: 413 MVIDLDETLVHSSF-KPINNAHFVVPVEIDGAV---------HQVYVLKRPHVDEFLRRC 562
+V+DLD TL+HS ++ + E D ++ + RP + EFL
Sbjct: 55 LVLDLDHTLLHSVLVSDLSKREKYLLEETDSRQDLWRRNVDGYEFIIKLRPFLHEFLLEA 114
Query: 563 GELY*CVLFTASLAKYADPVADLLD 637
+L+ ++T + YA V L+D
Sbjct: 115 NKLFTMHVYTMGSSSYAKQVLKLID 139
>At1g43600.1 68414.m05005 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 221
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Frame = +2
Query: 413 MVIDLDETLVHSSF-KPINNAHFVVPVEIDGAV---------HQVYVLKRPHVDEFLRRC 562
+V+DLD TL+HS ++ + E D ++ + RP + EFL
Sbjct: 21 LVLDLDHTLLHSVLVSDLSKREKYLLEETDSRQDLWRRNVDGYEFIIKLRPFLHEFLLEA 80
Query: 563 GELY*CVLFTASLAKYADPVADLLD 637
+L+ ++T + YA V L+D
Sbjct: 81 NKLFTMHVYTMGSSSYAKQVLKLID 105
>At3g19600.1 68416.m02485 NLI interacting factor (NIF) family
protein low similarity to CTD phosphatase [Xenopus
laevis] GI:13487713; contains Pfam profile PF03031: NLI
interacting factor
Length = 601
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 530 RPHVDEFLRRCGELY*CVLFTASLAKYADPVADLLD 637
RP + EFL+ E++ ++T YA+ + L+D
Sbjct: 148 RPFLCEFLKEANEMFTMYVYTKGTRPYAEAILKLID 183
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Frame = +2
Query: 413 MVIDLDETLVHSSFKP-INNAHFVVPVEIDGAVHQ-VYVLK------------RPHVDEF 550
+V+DLD TL+H+ P ++ A + E A ++ +K RP + +F
Sbjct: 388 LVLDLDHTLLHTVMVPSLSQAEKYLIEEAGSATRDDLWKIKAVGDPMEFLTKLRPFLRDF 447
Query: 551 LRRCGELY*CVLFTASLAKYADPVADLLD 637
L+ E + ++T YA V +L+D
Sbjct: 448 LKEANEFFTMYVYTKGSRVYAKQVLELID 476
>At3g46240.1 68416.m05005 protein kinase-related similar to light
repressible receptor protein kinase (GI:1321686)
[Arabidopsis thaliana]
Length = 441
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 85 IITQVSRDDEQLNNYGPDRGSSPGVQHNEGDGTPVSGSTPLGGKKSSGTGG 237
+I++ + + N G GS G G G+ SGS GG GTGG
Sbjct: 297 VISKGTSESTGGNETGSGSGSGSGGSGGGGSGSSGSGSGS-GGTSKGGTGG 346
>At2g25730.1 68415.m03084 expressed protein
Length = 2464
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 148 SPGVQHNEGDGTPVSGSTPLGGKKSSG 228
SPG + DG PVS T GKKS G
Sbjct: 981 SPGSANRAVDGNPVSHETEDKGKKSFG 1007
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,040,514
Number of Sequences: 28952
Number of extensions: 353035
Number of successful extensions: 1035
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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