Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0013
(823 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 33 0.065
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 30 0.46
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 29 0.60
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 28 1.8
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 27 2.4
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 4.3
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 5.6
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 26 7.4
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.8
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 32.7 bits (71), Expect = 0.065
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +1
Query: 478 KENIEAHAEEALDAPPRPDIEEEEGFVPVISHGR-----RPGKNRRDRERK 615
++ E H E + PR +E E + P + HGR R + RRDR+ +
Sbjct: 63 RDRYERHRESVREESPRRPVEHERNWQPELKHGRERFRERDYEGRRDRKER 113
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 29.9 bits (64), Expect = 0.46
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 566 SLMDGVLVKTGGTGNGKHPRELIKHHNSMLTLSPQRSNSNKLQ 694
++ + +LV+T G GNG E+I+ LT + NKLQ
Sbjct: 56 TIWNQMLVETKGAGNGPERFEMIRQKYKALTADEIQKYKNKLQ 98
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 29.5 bits (63), Expect = 0.60
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -1
Query: 328 HASTGHVGG*PNNFDANLDTFSVLCVQRVSQNHKQNTKARVYELI*SKLVAH 173
H+ST HV P + D +D S + Q+ S ++K KA + + S L +H
Sbjct: 44 HSSTDHVNVLPISQDKEMDISSPVKKQKASYSNKSPNKAPIQKSRGSSLKSH 95
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 449 TDA*EGPAPSADTRAAITPPLSLI*VRAR-APRREAITSAHPCFNRP 312
T A GP P + A T P+S+ +++ AP +++A NRP
Sbjct: 980 TAAARGPRPVVQNKPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRP 1026
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +1
Query: 451 LNFKGGESNKENIEAHAEEAL----DAPPRPDIEEEEGFVPVISHGRR-PGKNRRDRERK 615
LN K E N+E + +EAL +PP D + ++ + + ++ P N R E
Sbjct: 185 LNAKNYEENREPMSPSPQEALPLMPSSPPSQDYQNDQNHLILYTNSESIPKLNLRSNELV 244
Query: 616 APP 624
PP
Sbjct: 245 YPP 247
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 388 SGGVMAARVSAEGAGP---SYASVLNFKGGESNKENIEAHAEEALDAPPRPDI 537
+GG + ++ +A + P AS+L + K + + AEE++ PP+P +
Sbjct: 174 NGGSVGSQAAAPTSRPVENDAASILEALAAFAQKAPVPSAAEESVSTPPQPAV 226
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/91 (24%), Positives = 37/91 (40%)
Frame = +1
Query: 346 ASRRGARARTYIRDSGGVMAARVSAEGAGPSYASVLNFKGGESNKENIEAHAEEALDAPP 525
A+ R R+ ++ + V AE P +S K NK N H+E + + P
Sbjct: 376 ATIRANNVRSSFLEAPLPVQPNVQAETVTPKISS----KASPFNKPN-SVHSEASRNTPS 430
Query: 526 RPDIEEEEGFVPVISHGRRPGKNRRDRERKA 618
D E P++ HG G N + + ++
Sbjct: 431 SIDRENASHSNPIMMHGNDFGGNFNNMQSRS 461
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 247 RVSQNHKQNTKARVYELI*SKLVAHHTDPGRTVFTSKKFTS 125
R+S + T A +L+ +LV+H D R+ SK+F S
Sbjct: 113 RISLQVSETTAAHFCQLLREELVSHKADMQRSSEFSKQFFS 153
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 144 HQKNSLPSADSRFFSILNKAHEWYLSIESAV--CGEK 40
++KN L S+F S +NK E YL E + C EK
Sbjct: 28 YEKNELEIGVSKFLSFINKYGEPYLITEFQLQRCMEK 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,931
Number of Sequences: 5004
Number of extensions: 61319
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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