Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0011
(939 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0235 + 23819060-23819114,23819486-23819542,23819707-238198... 32 0.76
04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748 30 2.3
12_01_0647 - 5485100-5487028 29 4.0
08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945 29 4.0
04_01_0052 - 548383-548494,548523-548592,549184-549364 29 4.0
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 29 5.3
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 29 5.3
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 29 5.3
01_02_0060 - 10711215-10711801,10711840-10712026,10712117-10712347 29 5.3
11_03_0055 - 9356602-9356709,9357042-9357221 29 7.1
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 29 7.1
08_01_0982 - 9947192-9947474,9948649-9948950 29 7.1
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056 29 7.1
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678 28 9.3
>04_04_0235 +
23819060-23819114,23819486-23819542,23819707-23819808,
23820162-23820238,23820347-23820470,23820730-23820794,
23821827-23821896,23822395-23822470,23822597-23822687,
23822767-23822889
Length = 279
Score = 31.9 bits (69), Expect = 0.76
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 271 VSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPS 402
++DEP + KL D KE AN TS+A P P+ P+
Sbjct: 195 LNDEPWLTLLCKKLQLDIKEIIEANKTSEASFCAENSPVPFHPA 238
>04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748
Length = 373
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 529 TVMCEITFDPG-KFDTLCGPLVDSFA-STLNDESYTR 633
+V+ I +PG D CGPL+DSFA TLN T+
Sbjct: 158 SVVLFIVHNPGVSDDEACGPLIDSFAIKTLNPPQRTK 194
>12_01_0647 - 5485100-5487028
Length = 642
Score = 29.5 bits (63), Expect = 4.0
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 719 QWRNLRSLYSASACSSAVPLRKTRLSAAWKLQRRI--CVDLLCSL 847
QW L S++SAS S + L TRL++ L RRI C + + SL
Sbjct: 314 QWERLLSVFSASKTGSKI-LLTTRLNSVATLARRITGCEERVMSL 357
>08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945
Length = 493
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +2
Query: 350 LLKPYPLTTL-NLPHIDHLAPLY 415
LL+ +PLT L +L H+DH+ PLY
Sbjct: 290 LLRAHPLTPLVSLHHLDHVYPLY 312
>04_01_0052 - 548383-548494,548523-548592,549184-549364
Length = 120
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +1
Query: 550 FDPGKFDTLCG----PLVDSFASTLNDESYTRPLVDAIVNQSI 666
FD G FDT+C P +DSFA+ D SY ++DA+V+ ++
Sbjct: 33 FDSGMFDTVCSIGQFPALDSFAAQEFD-SY--DVIDAVVSGAV 72
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 29.1 bits (62), Expect = 5.3
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 775 VEENKIISGLETSEENMRGFAMFLAEIILSFEDSQGGRIRLSVKSLQVFCIYW 933
V + K + GL+ SE+NM + IILS E+ G + K+ Q F YW
Sbjct: 787 VTDGKCMEGLQ-SEKNMNSHIILAIHIILSIEERLNGLLIGPWKNPQ-FSSYW 837
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 29.1 bits (62), Expect = 5.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 RPKAVSDEPKVDTSKSK-LSADAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQA 435
+P + P ++S S + A A + P YT+ LP Y + Y P PS+Q L
Sbjct: 36 QPSSPPPPPPPESSPSHYVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAP 95
Query: 436 QDQN 447
D +
Sbjct: 96 YDHH 99
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 29.1 bits (62), Expect = 5.3
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Frame = +1
Query: 205 PKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEP 384
P G +G + N K D +VD + S D + Y + A+ +
Sbjct: 211 PPGFRKGLDLGNLKEYKSHWKCYQDGERVDEQSTSSSNDTMDKYSVQFDDLFKIAWEEDS 270
Query: 385 APYRPSRPSVQGRL--RQAQDQNPYNLDDMSYSLEEAENMDLRE 510
P VQ + + D + N+ + + E EN+D+ +
Sbjct: 271 DDKVPREDHVQQLVGDEETNDVDKQNISKLQNASETIENLDIEK 314
>01_02_0060 - 10711215-10711801,10711840-10712026,10712117-10712347
Length = 334
Score = 29.1 bits (62), Expect = 5.3
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 1/111 (0%)
Frame = +1
Query: 313 SADAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAE 492
+ADA P + T A N + P + + N DD + +
Sbjct: 150 AADATNTLPDSKTGVATLISNFAKKGFTPEELVILSGAHSIGKAHSSNFDDRLTAPDSEI 209
Query: 493 NMDLRENIANLITVMCEITFDPGKFDTLCGPLVDSFASTLND-ESYTRPLV 642
N D R+N+ N +P TL + D A+TL D SY P V
Sbjct: 210 NADYRDNVLNKTCKSSSAAANP----TLANNIRDIDAATLGDLASYVVPAV 256
>11_03_0055 - 9356602-9356709,9357042-9357221
Length = 95
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
Frame = -3
Query: 604 KQMNPPRDHTRCQ-TCP---GQRLS 542
K+ N PRDH++C+ CP GQRLS
Sbjct: 55 KKKNEPRDHSQCKPECPWSFGQRLS 79
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 439 LELDEVYLVQRGEMVYMGQVQCCKRVGLE--KCNLQG 335
L++D+V L + E V CCK++GL+ K N+ G
Sbjct: 349 LQIDDVDLFEINEAFASQYVYCCKKLGLDPAKVNVNG 385
>08_01_0982 - 9947192-9947474,9948649-9948950
Length = 194
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 187 NGDISAPKGRGRGWQMNNQARELR 258
NGD+ AP G G+G N RE R
Sbjct: 134 NGDLRAPSGGGQGLGSRNTCREAR 157
>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
Length = 530
Score = 28.7 bits (61), Expect = 7.1
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 715 DSVAQPEESVFRECLLERCSVEENKIISGLETSEENMRGFAMFLAEIILSFEDSQGGRIR 894
D A P RE +L R ++EE + EN+ + L ++L+F GR+R
Sbjct: 232 DGAAPPSFPRLRELVLNRSAIEEADL--------ENVVACSPALRTLVLAFSRGAPGRVR 283
Query: 895 LSVKSLQ 915
L+ SL+
Sbjct: 284 LASGSLR 290
>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
Length = 258
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 490 QLLQVNKTCHPNCMDFDLELDEVYLVQRG 404
++L V +C P CM+ +LD++ LV RG
Sbjct: 57 RVLMVLMSCCPICMNLYFDLDDIELVFRG 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,589,385
Number of Sequences: 37544
Number of extensions: 604526
Number of successful extensions: 1803
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1803
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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