Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0007
         (818 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL359085-5|CAI11007.1|  760|Homo sapiens transmembrane and tetra...    31   5.0  
AL359085-3|CAI11005.1|  225|Homo sapiens transmembrane and tetra...    31   5.0  
AL359085-2|CAI11004.1|  684|Homo sapiens transmembrane and tetra...    31   5.0  

>AL359085-5|CAI11007.1|  760|Homo sapiens transmembrane and
           tetratricopeptide repeat containing 4 protein.
          Length = 760

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 705 RADLSCALFFMLNISAFHRLFRLQNTQ 625
           RADL CALFF+L+   + + FR  N +
Sbjct: 191 RADLLCALFFLLSFLGYCKAFRESNKE 217


>AL359085-3|CAI11005.1|  225|Homo sapiens transmembrane and
           tetratricopeptide repeat containing 4 protein.
          Length = 225

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 705 RADLSCALFFMLNISAFHRLFRLQNTQ 625
           RADL CALFF+L+   + + FR  N +
Sbjct: 172 RADLLCALFFLLSFLGYCKAFRESNKE 198


>AL359085-2|CAI11004.1|  684|Homo sapiens transmembrane and
           tetratricopeptide repeat containing 4 protein.
          Length = 684

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 705 RADLSCALFFMLNISAFHRLFRLQNTQ 625
           RADL CALFF+L+   + + FR  N +
Sbjct: 115 RADLLCALFFLLSFLGYCKAFRESNKE 141


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,022,144
Number of Sequences: 237096
Number of extensions: 1626543
Number of successful extensions: 2059
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2054
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)