Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0001
(944 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 97 3e-21
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 97 4e-21
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 31 0.24
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 28 1.7
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 28 2.2
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 27 2.9
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 27 3.8
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 6.7
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27... 26 6.7
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 97.1 bits (231), Expect = 3e-21
Identities = 46/76 (60%), Positives = 54/76 (71%)
Frame = +2
Query: 455 SEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEM 634
+EQL++L H GL ++KLR+AK EAP NEKP VKTHLRNMII+PEM
Sbjct: 39 AEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMIILPEM 98
Query: 635 VGSIVGIYNGKTFNQV 682
VGS+VGIYNGK FNQV
Sbjct: 99 VGSVVGIYNGKLFNQV 114
Score = 39.1 bits (87), Expect = 9e-04
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3
Query: 171 LKKKRIFRKFTYRGVDLDQLLDM 239
L+KKR FR F YRGV+L+QLLD+
Sbjct: 15 LRKKRTFRTFAYRGVELEQLLDL 37
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 96.7 bits (230), Expect = 4e-21
Identities = 46/76 (60%), Positives = 54/76 (71%)
Frame = +2
Query: 455 SEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEM 634
+EQL++L H GL ++KLR+AK EAP NEKP VKTHLRNMII+PEM
Sbjct: 38 AEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNMIILPEM 97
Query: 635 VGSIVGIYNGKTFNQV 682
VGS+VGIYNGK FNQV
Sbjct: 98 VGSVVGIYNGKLFNQV 113
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3
Query: 171 LKKKRIFRKFTYRGVDLDQLLDM 239
L+KKR FR F YRGV+L+QLLD+
Sbjct: 14 LRKKRSFRTFAYRGVELEQLLDL 36
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 31.1 bits (67), Expect = 0.24
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 593 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVR 685
+KT +R+ I+P MVG+ ++NGK++ V+
Sbjct: 50 IKTAVRSATILPRMVGAQFMVHNGKSYANVK 80
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -2
Query: 685 AYLVKSF--SVVNADN*TDHLGNDDHVSQVSLHDLWLLIR 572
AY++ + ++ N N T H+ ++ V +V++HD+W I+
Sbjct: 6 AYILSEYLQTLDNVPNETKHIFDEISVKEVAVHDIWKRIQ 45
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 560 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 661
K A P++KP + THL +++I VG + ++
Sbjct: 60 KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 370 IKAYFTYNSSV*NMTVNSYKNPLTSNFFDTLHLR 269
+K F Y S V V YKN + ++F+D + R
Sbjct: 368 LKKAFAYTSEVFEKIVEEYKNIVQNDFYDLMFKR 401
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 62 LQILSVLYRQQYVKNLKTVLFKKSEQLCLCFSGRRNPQEKAYFQEVHL 205
L L ++Q+++NL + +Q + +RNP+E YF + L
Sbjct: 252 LSSLLASQKKQFIRNLALLDMAVGKQRSVRKEKKRNPEESIYFSTILL 299
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 212 SPVSELPENTLFLEGFVDLKNINIVAHFS*IALF*DSSHIADD 84
SP +E P + F + L +NI+A F + + ++ H+AD+
Sbjct: 529 SPSTERPPRSSFSAALMTL--LNIIASFKKVTMVIENIHLADE 569
>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 153
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 132 VSNYVYVFQVDETLKKKRIFRKFTYRGVDLDQLLDMPK 245
VS YV FQ+D +L+K+R Y GV D+ +P+
Sbjct: 98 VSGYVKFFQMDVSLRKRR-----KYVGVVFDKETTLPR 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,510,837
Number of Sequences: 5004
Number of extensions: 66723
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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