Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0169
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42128| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_47173| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_6998| Best HMM Match : Ribonuclease_T2 (HMM E-Value=8)              29   2.8  
SB_39327| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-15)                 28   6.5  
SB_58696| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_42190| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_42128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 247 KKWCVNALLNYSGSRINKVF*YKLSTFNI 333
           KKWCVN   N+   R+NK+   + + FN+
Sbjct: 40  KKWCVNMFENWRADRVNKITAKESTIFNV 68


>SB_47173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 147 VPNFSERLLPVSKFESWHSHIRFDFDLHHRPL 242
           +P F+E+ L   ++  WH   RF  DLHH+ L
Sbjct: 211 LPIFAEQSL---QYVDWHLQDRFTLDLHHKSL 239


>SB_6998| Best HMM Match : Ribonuclease_T2 (HMM E-Value=8)
          Length = 185

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 250 KWCVNALLNYSGSRINKVF*YKLSTFNI 333
           KWCVN   N   +R+NK+   + + FNI
Sbjct: 41  KWCVNMFENCRTNRVNKIAAKESTIFNI 68


>SB_39327| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-15)
          Length = 304

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 357 QKR*LNTRISIPHMILFINLTMLQVVVNTLILRMMF 464
           Q+R LN  I+IP  + +  L +  V+ NTL++  +F
Sbjct: 5   QERSLNEAITIPVGVAYFILALPTVIANTLVIIAIF 40


>SB_58696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 147 VPNFSERLLPVSKFESWHSHIRFDFDLHHRPL 242
           +P F+++ L   ++  WH   RF  DLHH+ L
Sbjct: 148 LPIFAKQSL---QYVDWHLQDRFTLDLHHKSL 176


>SB_42190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 147 VPNFSERLLPVSKFESWHSHIRFDFDLHHRPL 242
           +P F+++ L   ++  WH   RF  DLHH+ L
Sbjct: 248 LPIFAKQSL---QYVDWHLQDRFTLDLHHKSL 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,322,496
Number of Sequences: 59808
Number of extensions: 335225
Number of successful extensions: 582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)