Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0183
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)                  30   1.5  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         29   3.5  
SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_7259| Best HMM Match : ResIII (HMM E-Value=0.21)                    28   8.1  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   28   8.1  
SB_43919| Best HMM Match : Ribosomal_S30 (HMM E-Value=5)               28   8.1  

>SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)
          Length = 507

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 556 VKSLGYCFTRFLAGWN 509
           V+  GYCFTR L GWN
Sbjct: 482 VEDTGYCFTRSLHGWN 497


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 83  CSCENVHGALEKREMSGFVCVLMLAGVASAQITLDGIRCGQLICQLDEYCSPETNRCV 256
           C C   H   +K  ++  VC        +  +TLDG RC +   Q  + C  E+N CV
Sbjct: 691 CKCGQRHCG-DKSNLTNNVCQFSHCIHGNCMVTLDGHRCARCSEQAMDPC--ESNPCV 745


>SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 70  QCLCLFLRKCTRCFREERDVGIRVCPDARWRRLRSNHPGRHQMRSA 207
           Q L   + K   C+  E  +    CP  +W+++  N PG HQ   A
Sbjct: 516 QSLLTRIEKSRTCW--EAGIDYHWCPCLKWKQVSVNTPGIHQSAEA 559


>SB_7259| Best HMM Match : ResIII (HMM E-Value=0.21)
          Length = 956

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 2/107 (1%)
 Frame = +1

Query: 88  LRKCTRC-FREERDVGIRVCP-DARWRRLRSNHPGRHQMRSADMSARRILLPGDQPMRPC 261
           LR CT   + +    G+++   + R+   R   PG      A    +R   P   P  PC
Sbjct: 489 LRVCTDAIYAKAVPSGVKLVERNPRYGEWRHKKPGYEWRPEAAWGPKR--KPSTAPSLPC 546

Query: 262 NVVCNKTHHNYDSGLCVKECQGYLLDLRYMRRSETAPPPNDLGSIHR 402
           ++V   +   Y +G       G+ + +   R      P NDL   HR
Sbjct: 547 DLVAATSAKMYLAGQGGSGKTGWAVSMFRGRNVVVLTPENDLAHDHR 593


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 492 EIFKAKFQPAKNRVKQYPNDLTHHNPHAETPKPKPELKLEIRNPDPLRRTNQPFNVKDLK 671
           E FK + QP    V +            E P+PK E+K+E   P    R  QP   +++K
Sbjct: 611 EEFKIE-QPQPKEVVKIEQPQPEEEVRIEQPQPKEEVKIEQPQPKEEVRIEQPQPEEEVK 669


>SB_43919| Best HMM Match : Ribosomal_S30 (HMM E-Value=5)
          Length = 217

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 501 KAKFQPAKN-RVKQYPNDLTHHNPHAETPKPKPELKLEIRNPDPLRRTNQPFNV 659
           K K +P K   +K Y     HHN    +P   P+ KL +     ++ TN PF +
Sbjct: 86  KTKKKPTKGCALKNYYR--CHHNTRNWSPSKDPQKKLLLNPSARVKNTNCPFQM 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,816,954
Number of Sequences: 59808
Number of extensions: 469563
Number of successful extensions: 1259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)