Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0044
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713... 30 1.3
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930... 29 2.9
03_02_0680 + 10351625-10351824,10352224-10352266,10352477-103525... 29 2.9
07_03_0591 + 19792694-19792738,19794190-19794509,19795104-197951... 29 3.8
06_03_0561 - 22183140-22183185,22183273-22183442,22183554-221836... 29 3.8
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 28 5.1
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 28 5.1
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 28 5.1
>03_04_0143 +
17670103-17670430,17670511-17670785,17670897-17671376,
17671454-17671849,17673215-17673289,17673939-17673960,
17674041-17674129,17675204-17675495,17676019-17676087,
17676394-17676572
Length = 734
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 331 NGVVEPGLTAIRVLIVAGRTRDRIHDQQLRRGSS 432
+GVV+P + VL+V TR RI ++RRG++
Sbjct: 603 SGVVKPSIHCFYVLVVLFDTRRRIQMMKMRRGTT 636
>10_08_0459 +
18092656-18092724,18092827-18092886,18092970-18093038,
18093134-18093178,18093706-18094332,18094424-18094597,
18094688-18094991,18095070-18095161,18095253-18095319,
18095407-18095478,18095613-18095830,18095979-18096113,
18096225-18096520,18096603-18096774,18096860-18096958,
18097048-18097179,18097273-18097373,18097460-18097649,
18097713-18097751
Length = 986
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = +1
Query: 226 IVKLFCTVIFNNKHPVFEIQRGIFLSFVRHGVKRPNGVVEPGLTAIRVLIVAGRTRDRIH 405
++ +FC V+F + HP + FLS G + N + + GL ++ ++H
Sbjct: 773 VISVFCRVLFQDSHPSKSKRNYFFLSI---GAELINDISDKGLEKVKKSFEGATNARKLH 829
>03_02_0680 +
10351625-10351824,10352224-10352266,10352477-10352530,
10353122-10353185,10353385-10353441,10353516-10353610,
10353836-10353924,10354022-10354100,10355193-10355240,
10356675-10356767
Length = 273
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 425 GLVSKLIKPKTVVQFYISCFSTIKHAT 505
G+V K+ K + YI C ST+ HAT
Sbjct: 147 GVVVKMFSSKCSISVYIYCDSTVAHAT 173
>07_03_0591 +
19792694-19792738,19794190-19794509,19795104-19795161,
19798000-19798056,19798373-19798440,19798454-19798543,
19798619-19798820,19798902-19798988,19799642-19799719,
19799815-19800040,19800260-19800483,19801988-19802014,
19802470-19802518,19802594-19802688,19802778-19802864,
19802973-19803100,19803198-19803294,19803563-19803788,
19803888-19804294
Length = 856
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 168 VVTSFIILHIYNEYTFVIHYC 230
V+TSFII H+ NE+ V C
Sbjct: 808 VITSFIIFHVKNEFLLVTALC 828
>06_03_0561 -
22183140-22183185,22183273-22183442,22183554-22183619,
22183911-22184010,22184072-22184164,22184259-22184352,
22185029-22185257,22185460-22185556,22187406-22187710
Length = 399
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 324 AAERGRRTRS-NCDSRVDRGRPHTRSNSRPT 413
A ERG+R S C + VDR RP T S P+
Sbjct: 129 AIERGKRIASVQCSALVDRWRPETHSFHLPS 159
>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 28.3 bits (60), Expect = 5.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 226 IVKLFCTVIFNNKHP 270
++ +FC V+FNN HP
Sbjct: 1264 VINVFCRVLFNNNHP 1278
>04_04_0585 - 26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 28.3 bits (60), Expect = 5.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 226 IVKLFCTVIFNNKHP 270
++ +FC V+FNN HP
Sbjct: 1437 VINVFCRVLFNNNHP 1451
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 28.3 bits (60), Expect = 5.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 226 IVKLFCTVIFNNKHP 270
++ +FC V+FNN HP
Sbjct: 826 VINVFCRVLFNNNHP 840
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,436
Number of Sequences: 37544
Number of extensions: 259087
Number of successful extensions: 600
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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