Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0034
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41528-3|AAK39170.2| 594|Caenorhabditis elegans Kinesin-like pr... 30 1.6
AL023858-1|CAA19568.2| 328|Caenorhabditis elegans Hypothetical ... 29 2.1
U29244-15|AAC71096.2| 471|Caenorhabditis elegans Hypothetical p... 29 3.6
Z98866-19|CAB11556.2| 259|Caenorhabditis elegans Hypothetical p... 28 4.8
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr... 28 4.8
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical pr... 28 6.3
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 6.3
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 6.3
>U41528-3|AAK39170.2| 594|Caenorhabditis elegans Kinesin-like
protein protein 8 protein.
Length = 594
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 229 GKTELVKSSEEYLDRRRTRSLNAPSPIQQVWT---MRQDYEKFRHGHANP 369
G+ ++K S E L+++R+ S P+ + W M +YEKF+ + NP
Sbjct: 252 GENMVLKESLEQLEKKRSLS-----PVDEFWFRDGMSDEYEKFKKDNGNP 296
>AL023858-1|CAA19568.2| 328|Caenorhabditis elegans Hypothetical
protein ZK285.1 protein.
Length = 328
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 483 EPVY*LN-EGCQYLGVVNFLDDQHGEGRLDQVSLCDAGSWICMTMAEFFIILPHGPNLLY 307
E V LN E C Y+ + D+HGE + D +S G I + F ++ G N
Sbjct: 165 EQVLKLNIEECAYVAFWFWPVDEHGEFQPDLISFLGFGIMILILSWSFISVVYFGFNCYK 224
Query: 306 WGRRVQGSSSPSVQVL 259
+ + GS S Q L
Sbjct: 225 YISKQMGSLSSQSQAL 240
>U29244-15|AAC71096.2| 471|Caenorhabditis elegans Hypothetical
protein ZK1248.15 protein.
Length = 471
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 247 KSSEEYLDRRRTRSLNAPSPIQQVWTMRQDYEKFRHGHANPGSGVAEADLVKPP 408
K+ E D TR SP++ R+D E+ HG + E D+V PP
Sbjct: 40 KTKESLWDHPNTRKNEEKSPVKAKTRKRKDVEENIHGTMDDDK--MEVDVVPPP 91
>Z98866-19|CAB11556.2| 259|Caenorhabditis elegans Hypothetical
protein Y49E10.22 protein.
Length = 259
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 580 FHPTVKSPILPQRSVSSKNCRLDEPPPCFCHERASVLVERRV 455
F T K PI+P+ VS K + +PPP E VL R V
Sbjct: 166 FDFTAKKPIVPE--VSLKKSHIQKPPPPSKLESLDVLTRRLV 205
>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical
protein ZK370.4b protein.
Length = 1353
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 399 QASPHRAGHQESSRRPDTGTLRSTSTLARS*QKHGGGSSRRQ 524
Q SP R ESS + + ++ R KHG S RRQ
Sbjct: 143 QDSPGRTPTDESSDEENANVVMGGGSVPRRRSKHGNSSRRRQ 184
>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical
protein ZK370.4a protein.
Length = 1342
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 399 QASPHRAGHQESSRRPDTGTLRSTSTLARS*QKHGGGSSRRQ 524
Q SP R ESS + + ++ R KHG S RRQ
Sbjct: 143 QDSPGRTPTDESSDEENANVVMGGGSVPRRRSKHGNSSRRRQ 184
>Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical
protein C41G7.3 protein.
Length = 553
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 590 PDVLSPDGKVPNTPAKECVIQKL 522
P LSP ++P TP K CV++K+
Sbjct: 220 PPRLSPVQELPLTPPKTCVVEKI 242
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 6.3
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = +1
Query: 187 LFKKMLRRQYSHESGKTELVKSSEEYLDRRRTRSLNAPSPIQQVWTMRQDYEKFRHGHAN 366
LF + L ++ T V + EY T +N P ++ T QD+ + +HG+ N
Sbjct: 541 LFNQYLEHMNKEKANFTARV-ITPEYWPTYDTYEINIPKEMRDTLTDYQDFYRVQHGNRN 599
Query: 367 P--GSGVAEADL---VKPPLTVLVIKKVHDAQILAPFVQLVHWLV 486
G+A A + +P +I ++ IL F + W V
Sbjct: 600 VKWHHGLASAVISASFRPGCKKELIATMYQTVILLLFNKCETWTV 644
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 6.3
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = +1
Query: 187 LFKKMLRRQYSHESGKTELVKSSEEYLDRRRTRSLNAPSPIQQVWTMRQDYEKFRHGHAN 366
LF + L ++ T V + EY T +N P ++ T QD+ + +HG+ N
Sbjct: 578 LFNQYLEHMNKEKANFTARV-ITPEYWPTYDTYEINIPKEMRDTLTDYQDFYRVQHGNRN 636
Query: 367 P--GSGVAEADL---VKPPLTVLVIKKVHDAQILAPFVQLVHWLV 486
G+A A + +P +I ++ IL F + W V
Sbjct: 637 VKWHHGLASAVISASFRPGCKKELIATMYQTVILLLFNKCETWTV 681
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,881,622
Number of Sequences: 27780
Number of extensions: 358361
Number of successful extensions: 1024
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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