Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0028
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 31 0.14
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 29 0.56
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 0.97
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 27 2.3
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 2.3
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 27 3.0
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 26 3.9
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 5.2
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Frame = +2
Query: 266 CCSYS----CTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPAS 397
CCS C+ CCS TSCC CC + CCSN S
Sbjct: 247 CCSSKKPSCCSQEKKGCCSTE-KTSCCSQEKKSCCTSEKPSCCSNGKS 293
Score = 28.7 bits (61), Expect = 0.74
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Frame = +2
Query: 260 SICCSY--SCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCS-NPASGSLHSPCSCCI 430
S CCS S CCS SCC S CC CCS S SCC
Sbjct: 223 SSCCSKKDSSPSEKPSCCSQE-KKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCT 281
Query: 431 CCRLPIWSSTSST 469
+ S+ ST
Sbjct: 282 SEKPSCCSNGKST 294
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 29.1 bits (62), Expect = 0.56
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -1
Query: 528 KALCSFSSIEQTLVQIHTGNVLEVLDHMGSRQHMQQEQGECREPLAGLEQHQHSMAKQHR 349
K++C +S + T + G ++ DH + +Q+ E + + Q+ +M+ + R
Sbjct: 948 KSVCVNNSAD-TSTNLWLGTCTDIHDHKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIR 1006
Query: 348 MPLLG-QQEVPHLLEQQ 301
PL+G V LLE Q
Sbjct: 1007 TPLIGITGMVSFLLETQ 1023
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 0.97
Identities = 21/66 (31%), Positives = 26/66 (39%)
Frame = +2
Query: 269 CSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCSCCICCRLPI 448
C TL T S+ C T+ CP G L C L W +G L + S
Sbjct: 79 CYCGSTLTATEVSSSLC-TTPCPGYGSLMCGGDLYWSVYLTGNGVLQTTVSSSSVSSTTS 137
Query: 449 WSSTSS 466
SS+SS
Sbjct: 138 SSSSSS 143
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Frame = -1
Query: 534 CRKALCSFSSIEQTLVQIHTGNVLEVLDHMGSR---QHMQQ---EQGECRE 400
C+K+ S++++ + IH GN+ D G++ +HM Q E+G C++
Sbjct: 243 CKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERGTCKK 293
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1283
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Frame = -1
Query: 204 CPAG--DINLCSVWRNVLRYSLSVSHVGWSNQRSS-----GYCWNSC 85
C AG D++ C+ W Y + NQ +S YCWN C
Sbjct: 1237 CSAGVTDMSECNTWSYQKSYDYITGCNNYDNQGNSQTDASDYCWNVC 1283
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 368 LCWCCSNPASGSLHSPCSCCICCRLPI 448
LC C S P+ G H P C LPI
Sbjct: 297 LCACHSIPSRGGFHCPRCKAKVCTLPI 323
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 600 PKLYFIHQYKLLSTNK-SFVLSLCRKALCSFSSIEQTLVQIHTGNVLEVLDHM 445
P+ Y I K L+ + + V +L K LCSFS + + + L L H+
Sbjct: 372 PEGYCIWYLKTLNDSPCNEVFNLATKKLCSFSGCDDLEIIVQVDETLNQLRHI 424
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 290 RCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCSCCICCR 439
+C C + SC P I C F IL A G+ + C +C R
Sbjct: 205 KCVICLDSPENLSCTPCGHIFCNFCIL------SALGTTAATQKCPVCRR 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,791
Number of Sequences: 5004
Number of extensions: 39277
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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