Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0028
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 31 0.48
At1g15780.1 68414.m01893 expressed protein 31 0.48
At1g24300.1 68414.m03066 GYF domain-containing protein contains ... 30 1.5
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ... 30 1.5
At1g27430.1 68414.m03343 GYF domain-containing protein contains ... 29 1.9
At5g62090.2 68418.m07793 expressed protein 29 2.6
At5g62090.1 68418.m07792 expressed protein 29 2.6
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden... 29 2.6
At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identica... 29 2.6
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 29 3.4
At1g69280.1 68414.m07943 expressed protein 29 3.4
At1g32190.1 68414.m03959 expressed protein 29 3.4
At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family... 28 4.5
At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family... 28 4.5
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p... 28 4.5
At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to ribo... 28 4.5
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 28 5.9
At1g55080.1 68414.m06291 expressed protein 28 5.9
At5g36740.1 68418.m04402 PHD finger family protein 27 7.8
At5g36670.1 68418.m04388 PHD finger family protein 27 7.8
At5g01480.1 68418.m00061 DC1 domain-containing protein contains ... 27 7.8
At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM do... 27 7.8
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 27 7.8
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 27 7.8
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 31.5 bits (68), Expect = 0.48
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = -1
Query: 438 RQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRVQL*EQQME 259
+Q + Q+Q + ++ +Q QH +Q +MP L QQ+ H +QQ+ + QL Q +
Sbjct: 686 QQQLHQQQQQQQQIQQQQQQQQH--LQQQQMPQLQQQQQQHQQQQQQQHQLSQLQHHQQQ 743
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 438 RQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLEQ-QKVQRRVQL*EQQM 262
+Q QQ+ + ++ L+Q Q +Q + QQ+ H L Q Q Q++ Q +QQ
Sbjct: 692 QQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQQQQQQHQLSQLQHHQQQQQQQQQQQ 751
Query: 261 ELHR 250
+ H+
Sbjct: 752 QQHQ 755
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -1
Query: 462 EVLDHMGSRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRV 283
++ +QH+QQ+Q + +QHQ +QH++ L Q +QQ+ Q++
Sbjct: 698 QIQQQQQQQQHLQQQQMPQLQQQQ--QQHQQQQQQQHQLSQL-QHHQQQQQQQQQQQQQH 754
Query: 282 QL*EQQ 265
QL + Q
Sbjct: 755 QLTQLQ 760
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/71 (23%), Positives = 37/71 (52%)
Frame = -1
Query: 474 GNVLEVLDHMGSRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLEQQKV 295
G+++ + ++Q QQ+Q ++ +Q Q +Q + L QQ++P L +QQ+
Sbjct: 669 GDMVVFKPQIPNQQQQQQQQLHQQQ-----QQQQQIQQQQQQQQHLQQQQMPQLQQQQQQ 723
Query: 294 QRRVQL*EQQM 262
++ Q + Q+
Sbjct: 724 HQQQQQQQHQL 734
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 31.5 bits (68), Expect = 0.48
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 393 AGLEQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRVQL*EQQME 259
+ L QHQH +Q + L QQ ++QQ++Q R Q +QQ++
Sbjct: 822 SSLLQHQHLKQQQDQQMQLKQQFQQRQMQQQQLQARQQQQQQQLQ 866
>At1g24300.1 68414.m03066 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1417
Score = 29.9 bits (64), Expect = 1.5
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = -1
Query: 480 HTGNVLEVLDHMGSRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPL-LGQQEVPHLLEQ 304
H N + D + S QH QQ Q + R+ L+ + + + L L QQ+ L +Q
Sbjct: 664 HLSNRFNLGDQLSSNQHNQQ-QFQNRDMLSHSHIGDQAQDLDYLITLQLQQQQKIQLQQQ 722
Query: 303 QKV----QRRVQL*EQQ-MELHR 250
QK+ Q+++QL +QQ M+L +
Sbjct: 723 QKIQLQQQQKIQLQQQQKMQLQQ 745
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 387 LEQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRVQL*EQQMELHR 250
L+Q Q +Q + L QQ+ L +QQK+Q + EQ+ +LH+
Sbjct: 711 LQQQQKIQLQQQQKIQLQQQQKIQLQQQQKMQLQQHQLEQEHQLHQ 756
>At1g06070.1 68414.m00636 bZIP transcription factor, putative
(bZIP69) similar to transcriptional activator RF2a
GB:AF005492 GI:2253277 from [Oryza sativa]; contains
Pfam profile PF00170: bZIP transcription factor
Length = 423
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -1
Query: 435 QHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRVQ 280
Q +QQ Q + ++ +QHQ +Q + QQ++ L +QQ++Q++ Q
Sbjct: 340 QQLQQLQIQSQKQQQQQQQHQQQQQQQQQQFHFQQQQLYQLQQQQRLQQQEQ 391
>At1g27430.1 68414.m03343 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1531
Score = 29.5 bits (63), Expect = 1.9
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Frame = -1
Query: 480 HTGNVLEVLDHMGSRQHMQQEQGECREPLAGLE------QHQHSMAKQHRMPL-LGQQEV 322
H N D + S QH QQ + R+ L+ L +H ++ Q + + + QQ+
Sbjct: 743 HESNFFNHGDQLPSNQHHQQHF-QNRDMLSHLHIGDQDLEHLITLQLQQQQKIQMQQQQK 801
Query: 321 PHLLEQQKVQRRVQL*EQQMELHR 250
L +QQK+Q + EQ+ +LH+
Sbjct: 802 IQLQQQQKIQLQQHQLEQEHQLHQ 825
>At5g62090.2 68418.m07793 expressed protein
Length = 816
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = -1
Query: 438 RQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRVQL*EQQME 259
+Q QQ+QG+ + L+Q + +Q+ L Q V L +QQ+VQ++ QL +Q +
Sbjct: 208 QQQQQQQQGQNPQFQILLQQQKLRQQQQYLQSLPPLQRV-QLQQQQQVQQQQQLQQQHQQ 266
>At5g62090.1 68418.m07792 expressed protein
Length = 816
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = -1
Query: 438 RQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRVQL*EQQME 259
+Q QQ+QG+ + L+Q + +Q+ L Q V L +QQ+VQ++ QL +Q +
Sbjct: 208 QQQQQQQQGQNPQFQILLQQQKLRQQQQYLQSLPPLQRV-QLQQQQQVQQQQQLQQQHQQ 266
>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
identical to SEUSS transcriptional co-regulator
[Arabidopsis thaliana] gi|18033922|gb|AAL57277
Length = 877
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -1
Query: 438 RQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRVQL*EQQME 259
RQ QQ+Q + + Q Q ++ +Q R+ L QQ++ + QQ+ Q Q +Q +
Sbjct: 233 RQQQQQQQQQFLQMPGQSPQAQMNIFQQQRLMQLQQQQLLKSMPQQRPQLPQQFQQQNLP 292
Query: 258 L 256
L
Sbjct: 293 L 293
>At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identical
to ARF6 [Arabidopsis thaliana] GI:4102600 (Science 276
(5320), 1865-1868 (1997))
Length = 933
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = -1
Query: 435 QHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRVQL*EQQMEL 256
Q +QQ+ + ++ L+ +Q Q +++Q + L QQ+ L QQ+ Q+ Q +QQ L
Sbjct: 480 QMLQQQLSQQQQQLSQQQQQQQQLSQQQQQQLSQQQQ--QQLSQQQQQQLSQQQQQQAYL 537
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/74 (22%), Positives = 30/74 (40%)
Frame = -1
Query: 426 QQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRVQL*EQQMELHRG 247
QQ+ + ++ L Q Q Q + L QQ+ L +QQ+ Q + + E +
Sbjct: 490 QQQLSQQQQQQQQLSQQQQQQLSQQQQQQLSQQQQQQLSQQQQQQAYLGVPETHQPQSQA 549
Query: 246 YGRSEGRCCYQRTQ 205
+S Q+ Q
Sbjct: 550 QSQSNNHLSQQQQQ 563
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +2
Query: 290 RCTFCCSNRCGTSCCPSSGILCCFAILCWC 379
+CT C S R + P + C I+ WC
Sbjct: 326 KCTLCLSTRQHPTATPCGHVFCWSCIMEWC 355
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 254 CNSICCSYSCTLRCTFCCSNRCGTSCCPSS 343
C C Y+ + FCC C + CC SS
Sbjct: 339 CRWPSCDYNSSCGWLFCCHWSCWSCCCCSS 368
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 28.7 bits (61), Expect = 3.4
Identities = 26/81 (32%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Frame = +2
Query: 227 RPSL-LP*PLCNSICCSYSCTLRCTFCCSNRCGT-----SCC--PSSGILCCFAILCWCC 382
RPS P P C CS C C C T SCC PS CC + C
Sbjct: 302 RPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPSCVSSCCCPT--FKC 359
Query: 383 SNPASGSLHSPCSCCICCRLP 445
S+ CSC C + P
Sbjct: 360 SSCFGKPKCPKCSCWKCLKCP 380
>At4g23470.2 68417.m03383 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 199
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Frame = +2
Query: 305 CSNRCGTSCCP----SSGILCCFA 364
CS RCG + CP ++ + CCFA
Sbjct: 13 CSGRCGEAKCPQLCLATEVFCCFA 36
>At4g23470.1 68417.m03382 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 255
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Frame = +2
Query: 305 CSNRCGTSCCP----SSGILCCFA 364
CS RCG + CP ++ + CCFA
Sbjct: 69 CSGRCGEAKCPQLCLATEVFCCFA 92
>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
protease, putative contains similarity to cysteine
proteinase RD21A (thiol protease) GI:435619, SP:P43297
from [Arabidopsis thaliana]
Length = 452
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +2
Query: 257 NSICCSYSCT-LRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCSCCIC 433
N C S+ C CC + G+SCCP S +C +N +SP S
Sbjct: 382 NGKCYSWGCCPYESATCCDD--GSSCCPQSYPVCDLK------ANTCRMKGNSPLSIKAL 433
Query: 434 CRLPIWSSTSST 469
R P ++T ST
Sbjct: 434 TRGPAIATTKST 445
>At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to
ribonuclease SP:P42815 Ribonuclease 3 precursor (EC
3.1.27.1) {Arabidopsis thaliana}
Length = 222
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 246 YGRSEGRCCYQRTQCPAGDINLCSVWRN 163
Y S CCY +T PA D + +W N
Sbjct: 35 YCDSRHSCCYPQTGKPAADFGIHGLWPN 62
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = -1
Query: 510 SSIEQTLVQIHTGNVLEVLDHMGSRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQ 331
S IE +++ + + S+Q QQ+Q + + L++ Q +Q Q
Sbjct: 77 SYIETQMIKAREQQLQQSQHPQVSQQQQQQQQQQIQMQQLLLQRAQQQQQQQQ------Q 130
Query: 330 QEVPHLLEQQKVQRRVQL*EQQMELHRGYGRSE 232
Q H +QQ+ Q++ Q +QQ + H+ S+
Sbjct: 131 QHHHHQQQQQQQQQQQQQQQQQQQQHQNQPPSQ 163
>At1g55080.1 68414.m06291 expressed protein
Length = 244
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = -1
Query: 438 RQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRVQL*EQQME 259
+Q +QQ+Q + ++ L+Q Q + +Q + QQE+ + Q+ Q +Q +QQ +
Sbjct: 37 QQQLQQQQQQQQQQQFHLQQQQQTQQQQQQFQPQQQQEMQQYQQFQQQQHFIQ--QQQFQ 94
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 489 VQIHTGNVLEVLDHMGSRQHMQQEQGECREPLAGLE 382
++IH GN L + +G+R +M + QG CR + G+E
Sbjct: 868 IRIH-GNQLAEMPFIGTR-YMYRRQGMCRRLMDGIE 901
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 489 VQIHTGNVLEVLDHMGSRQHMQQEQGECREPLAGLE 382
++IH GN L + +G+R +M + QG CR + G+E
Sbjct: 868 IRIH-GNQLAEMPFIGTR-YMYRRQGMCRRLMDGIE 901
>At5g01480.1 68418.m00061 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 413
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 302 CCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSP 415
CCS + G +C FA+ C NP S ++ +P
Sbjct: 137 CCSCKRGVDALFYYCSICDFAVHMACAGNPTSPTIDNP 174
>At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM
domain-containing protein contains Pfam profile: PF01593
Flavin containing amine oxidase
Length = 789
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 384 EQHQHSMAKQHRMPLLGQQEVPHLLEQQKVQRRVQL*EQQ-MELHRGYGRSEGRCCY 217
++++ A QH +L QQ H +QQ++Q L QQ ++L G E R Y
Sbjct: 687 KRNEDPKADQHSNKILFQQLQSHFNQQQQIQVYTLLTRQQALDLREVRGGDEKRLYY 743
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = -1
Query: 486 QIHTGNVLEVLDHMGSRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLE 307
Q+H ++ L+ Q +QQ+Q + + + + Q Q L QQ + +
Sbjct: 411 QLHQSSMS--LNQQQISQIIQQQQQQSQLGQSQMNQSHSQQQLQQMQQQLQQQPQQQMQQ 468
Query: 306 QQKVQRRVQL*EQQ 265
QQ+ Q+++Q+ +QQ
Sbjct: 469 QQQQQQQMQINQQQ 482
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = -1
Query: 486 QIHTGNVLEVLDHMGSRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQEVPHLLE 307
Q+H ++ L+ Q +QQ+Q + + + + Q Q L QQ + +
Sbjct: 411 QLHQSSMS--LNQQQISQIIQQQQQQSQLGQSQMNQSHSQQQLQQMQQQLQQQPQQQMQQ 468
Query: 306 QQKVQRRVQL*EQQ 265
QQ+ Q+++Q+ +QQ
Sbjct: 469 QQQQQQQMQINQQQ 482
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,867,746
Number of Sequences: 28952
Number of extensions: 224486
Number of successful extensions: 944
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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