Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0023
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 93 2e-19
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 93 2e-19
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 81 7e-16
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 5e-07
12_01_0603 + 4937472-4938351,4938597-4938689,4938820-4939589,493... 29 3.1
08_01_0473 - 4169754-4169938,4170039-4170121,4170297-4170347,417... 28 5.4
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 7.1
07_01_1198 + 11376510-11376644,11377471-11377620,11378254-11378397 27 9.4
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/48 (87%), Positives = 47/48 (97%)
Frame = -1
Query: 255 KNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 112
+NDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 95 ENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/48 (77%), Positives = 42/48 (87%)
Frame = -2
Query: 395 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEK 252
G LEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE+
Sbjct: 48 GIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEE 95
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/48 (87%), Positives = 47/48 (97%)
Frame = -1
Query: 255 KNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 112
+NDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 265 ENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/46 (86%), Positives = 45/46 (97%)
Frame = -1
Query: 255 KNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 118
+NDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 95 ENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/48 (77%), Positives = 42/48 (87%)
Frame = -2
Query: 395 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEK 252
G LEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE+
Sbjct: 48 GIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEE 95
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/48 (77%), Positives = 42/48 (87%)
Frame = -2
Query: 395 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEK 252
G LEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IE+
Sbjct: 218 GIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEE 265
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 80.6 bits (190), Expect = 7e-16
Identities = 35/48 (72%), Positives = 41/48 (85%)
Frame = -2
Query: 395 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEK 252
G LEK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I++
Sbjct: 119 GIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKE 166
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -1
Query: 249 DEVLVAGFGRKGHAVGDIPGVRFKVVK 169
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>12_01_0603 +
4937472-4938351,4938597-4938689,4938820-4939589,
4939706-4939809,4940026-4940548,4940697-4941074
Length = 915
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 262 WFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLASTPTFSRGGPVPIRPIVSRITIHWP 441
W + GT + F + + R + + GC++ TP +RG P P+VS + W
Sbjct: 134 WIIRSCGGTPHGSDFAYFHTIRRYTKQNTQFGCVSFTPRSNRGCP---WPLVSTMRTKWG 190
Query: 442 S 444
S
Sbjct: 191 S 191
>08_01_0473 -
4169754-4169938,4170039-4170121,4170297-4170347,
4170434-4170507,4170585-4170679,4171672-4171754,
4171848-4172104
Length = 275
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 4 SAAAEFGGRGSLGFYIL*TYKQRASRQQVTYHNVHL*SWS 123
+AAAE GG G G + T ++ A+ + YH V WS
Sbjct: 51 AAAAEGGGGGGGGKLVAETMRKYAAPRSSRYHGVTRLKWS 90
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +3
Query: 81 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 230
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
>07_01_1198 + 11376510-11376644,11377471-11377620,11378254-11378397
Length = 142
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 465 PVTTVVKRRPVNCNTTHYRANWDRAPPRESWCR 367
PVT+V PV+ TH+ W+R P++ W R
Sbjct: 24 PVTSVPLSSPVS---THWERRWER-KPKKQWVR 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,254,573
Number of Sequences: 37544
Number of extensions: 333564
Number of successful extensions: 793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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