Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0018
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 231 4e-62
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 122 2e-29
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 106 2e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 86 2e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 2e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 9e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 58 6e-10
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.22
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 28 0.69
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 27 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 26 3.7
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 3.7
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 3.7
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 25 4.8
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 25 6.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 231 bits (565), Expect = 4e-62
Identities = 102/113 (90%), Positives = 108/113 (95%)
Frame = +2
Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSK 268
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGD +SK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 269 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKS 114
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 122 bits (295), Expect = 2e-29
Identities = 54/104 (51%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKRGILTL 286
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG ++ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 287 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 415
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 106 bits (254), Expect = 2e-24
Identities = 49/113 (43%), Positives = 76/113 (67%), Gaps = 2/113 (1%)
Frame = +2
Query: 95 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDGHKSK 268
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGD ++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 269 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP A
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVA 114
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 86.2 bits (204), Expect = 2e-18
Identities = 51/129 (39%), Positives = 68/129 (52%), Gaps = 24/129 (18%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV---GDGH-KSK 268
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ G GH SK
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 269 RGI------------------LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 394
R +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 395 LLTEAPLNP 421
LLTE PLNP
Sbjct: 127 LLTEPPLNP 135
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.1 bits (164), Expect = 2e-13
Identities = 39/110 (35%), Positives = 60/110 (54%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +KS
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 272 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 421
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 64.5 bits (150), Expect = 9e-12
Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKRGILTL 286
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG+ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 287 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 421
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 58.4 bits (135), Expect = 6e-10
Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV D +
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 272 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKALQRR 439
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++++++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQ 119
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.22
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 249 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 88
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 28.3 bits (60), Expect = 0.69
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 152 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKRGILTLKYP 295
G+ PRA F ++ P H G+++ M KD G+ S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 388 PRPAY*GSPQPQGPTEEKMTPDSWFENNSTRPAMY 492
PR Y G P P ++ WF N R A Y
Sbjct: 61 PRTLYFGLPLPDSELDDTGEAKRWFPRNKIRTAKY 95
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 252 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 136
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 3.7
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 2/131 (1%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKRGILTL 286
+V+DNG+ KAGFAG P+ + R + G + +G + + D L
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSK-DGNRLFLGNELANCND-----FTTLQF 59
Query: 287 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKALQRRR*PQIHG 460
+ E G + +W +W N + P ++ +LLT+ +++ +
Sbjct: 60 RRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFE 119
Query: 461 SKTIQHAPPCT 493
PCT
Sbjct: 120 EFQFDAYLPCT 130
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 251 LLHKSPSVPYRPSRPDGGAFPRSRET 174
L+ K+PS PY SRP A S T
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPT 334
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 3.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 293 PIEHGIVTNWDDMEKIWHHTF 355
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 257 HKSKRGILTLK--YPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 382
HK + ++ + YP G++ +W ++E + E+R+ P+
Sbjct: 231 HKDRAWLIDINPFYPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 235 GLLCRRWAQEQKRYPDPQIPHRTRNR 312
GLL +RW Q + D ++ TR R
Sbjct: 305 GLLTKRWKQVESEMEDEKLLRTTRKR 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,768
Number of Sequences: 5004
Number of extensions: 50572
Number of successful extensions: 150
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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