Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0018
(502 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 244 2e-65
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 240 5e-64
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 240 5e-64
SB_56| Best HMM Match : Actin (HMM E-Value=0) 238 2e-63
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 237 4e-63
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 176 1e-44
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 1e-21
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 1e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 55 4e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 51 5e-07
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 48 3e-06
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 36 0.025
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 32 0.31
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.40
SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.93
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 28 3.8
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_38695| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 6.6
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_28820| Best HMM Match : Sec23_BS (HMM E-Value=3.6) 27 8.7
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 8.7
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5) 27 8.7
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 244 bits (598), Expect = 2e-65
Identities = 110/115 (95%), Positives = 113/115 (98%)
Frame = +2
Query: 83 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHK 262
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 263 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 240 bits (587), Expect = 5e-64
Identities = 109/115 (94%), Positives = 112/115 (97%)
Frame = +2
Query: 83 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHK 262
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 263 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 240 bits (587), Expect = 5e-64
Identities = 107/115 (93%), Positives = 112/115 (97%)
Frame = +2
Query: 83 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHK 262
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 263 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 238 bits (583), Expect = 2e-63
Identities = 108/113 (95%), Positives = 111/113 (98%)
Frame = +2
Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSK 268
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD +SK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 269 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 114
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 237 bits (580), Expect = 4e-63
Identities = 107/113 (94%), Positives = 111/113 (98%)
Frame = +2
Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSK 268
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD +SK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 269 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 114
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 176 bits (428), Expect = 1e-44
Identities = 80/89 (89%), Positives = 84/89 (94%)
Frame = +2
Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSK 268
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD +SK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 269 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 355
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 99 bits (238), Expect = 1e-21
Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 3/110 (2%)
Frame = +2
Query: 101 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDGHKSKRG 274
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGD R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 275 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNP 421
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNP 116
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 208
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 208
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 335 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKALQRR 439
K+W H F ++LRV E+ PVLLTEAPLNPK + R
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRER 2163
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Frame = +2
Query: 77 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 247
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 248 GDGHKSKRGILTL 286
GD +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 51.2 bits (117), Expect = 5e-07
Identities = 24/60 (40%), Positives = 32/60 (53%)
Frame = +2
Query: 221 GMGQKDSYVGDGHKSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 400
G+ D ++GD K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.4 bits (110), Expect = 3e-06
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Frame = +2
Query: 95 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKRG 274
++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD + +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283
Query: 275 ILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKALQRRR* 445
L Y P + G + NWD ++IW +TF E L A +E +L E N KAL R
Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTFGKEGLEDAMDE--ILFEE--YNFKALSRTTA 339
Query: 446 PQIHGSKTIQ 475
Q+ K Q
Sbjct: 340 AQLSAYKCHQ 349
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 35.5 bits (78), Expect = 0.025
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 293 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 424
PI+ G++ +WD EKI + + ++ HP+L++EA N +
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTR 46
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.043
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -1
Query: 205 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 89
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 31.9 bits (69), Expect = 0.31
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +2
Query: 383 EHPVLLTEAPLNPK 424
+HPVLLTEAPLNP+
Sbjct: 126 QHPVLLTEAPLNPR 139
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.40
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 180 GNTARGASSPAKPALHIPEPLSTT 109
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.40
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 180 GNTARGASSPAKPALHIPEPLSTT 109
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 31.5 bits (68), Expect = 0.40
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 315 LTGMTWRRFGIIPSTMSCVSPPRNTPSCLLRLPSTPRPYRGEDDPRFMVRKQ 470
LT +R+ + P + +PP P+ + PR Y +DDP RK+
Sbjct: 34 LTNADFRKLLMTPRSAPSAAPPSVKPASVKETVGKPRQYNEDDDPTTARRKK 85
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 30.7 bits (66), Expect = 0.71
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 284 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNP 421
L+ P + +VT+++ E++ H F + P HPV++TE NP
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNP 178
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.93
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 180 GNTARGASSPAKPALHIPEPLSTT 109
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 412 PQPQGPTEEKMTPDSWFENNSTRPAMYRRP 501
P+P+ PTEE+ PD+ E RP+ +RP
Sbjct: 346 PRPRLPTEER-EPDAISEEGLVRPSSVKRP 374
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -3
Query: 272 LFCSCAHLLHKSPSVPYRPSRPDGGAFPRSRETLREEHHLLRSRPCTYRSH 120
+ CSC + H+ PSR D FP + HH+L S + R+H
Sbjct: 128 IVCSCRCVPHRVLMSMCSPSRADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 180 GNTARGASSPAKPALHIPEPLSTT 109
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 180 GNTARGASSPAKPALHIPEPLSTT 109
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 190 GKAPPSGRDGRYGTEGLLCRRWAQEQKRYPDP--QIPHRTRN 309
G A PSG DG G E L K +PDP ++PH RN
Sbjct: 134 GPAGPSGADGPQGPEDL---------KAHPDPLEKVPHHLRN 166
>SB_38695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 205 SGRDGRYGTEGLLCRRWAQE 264
SG G YG G+ CR W QE
Sbjct: 86 SGGTGDYGIRGVHCRLWNQE 105
>SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 241 RVLLSHTDHHALMAGPSHDRGKHCARSIISCEAGLAHTGAIVYY 110
R++ S T H + G H G H ++ EAGL I+ +
Sbjct: 37 RLVFSATIEHEYLGGRYHSIGAHISQETSRHEAGLTQISRIIRF 80
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 195 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 85
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 200 GAFPRSRETLREEHHLLRSRPCTYRS 123
G +P S++T R E + +RPCT S
Sbjct: 832 GCYPWSKQTFRHEGPPISARPCTAMS 857
>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 263 SCAHLLHKSPSVPYRPSRPDGGAFPRSRETLREEHHLLRSRPC 135
+C HK P +RP G P+ E+L +E S PC
Sbjct: 575 ACGEWRHKKPGYEWRPEAAWG---PKKSESLAKEPSTAPSLPC 614
>SB_28820| Best HMM Match : Sec23_BS (HMM E-Value=3.6)
Length = 424
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 379 RGTPRPAY*GSPQPQGPTEEKMTPDSWFENN 471
+GTP Y + Q QG + TP S+++NN
Sbjct: 165 QGTPSSYYDNNTQEQGRLAVQGTPCSYYDNN 195
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 101 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 205
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
Length = 334
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 266 CSCAHLLHKSPSVPYRPSRPDGGAFPRSRETLREEHHLLRSRPCTYRSH 120
CSC +LH+ PSR + G F + L H +L S + R+H
Sbjct: 278 CSCRCVLHRGLMSMCFPSRANVGVFHIACSCLCVLHRVLMSMCSSSRAH 326
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,109,467
Number of Sequences: 59808
Number of extensions: 456508
Number of successful extensions: 1337
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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