Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0018
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 221 3e-58
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 221 3e-58
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 220 4e-58
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 220 4e-58
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 220 5e-58
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 220 5e-58
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 215 1e-56
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 215 1e-56
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 215 1e-56
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 206 9e-54
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 157 4e-39
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 128 2e-30
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 115 2e-26
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 97 6e-21
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 89 2e-18
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 77 5e-15
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 62 2e-10
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 54 5e-08
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 44 6e-05
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.062
At2g22330.1 68415.m02649 cytochrome P450, putative similar to cy... 32 0.25
At1g16690.2 68414.m01999 transcription factor-related similar to... 28 4.1
At1g16690.1 68414.m01998 transcription factor-related similar to... 28 4.1
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 5.4
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si... 27 5.4
At4g26670.1 68417.m03842 mitochondrial import inner membrane tra... 27 7.1
At2g25680.1 68415.m03078 expressed protein ; expression supporte... 27 7.1
At5g13500.3 68418.m01559 expressed protein predicted protein At2... 27 9.4
At5g13500.2 68418.m01558 expressed protein predicted protein At2... 27 9.4
At5g13500.1 68418.m01557 expressed protein predicted protein At2... 27 9.4
At4g14746.1 68417.m02269 expressed protein 27 9.4
At3g05750.1 68416.m00646 expressed protein 27 9.4
At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subun... 27 9.4
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 221 bits (539), Expect = 3e-58
Identities = 99/112 (88%), Positives = 105/112 (93%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGD +SKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 272 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 116
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 221 bits (539), Expect = 3e-58
Identities = 99/112 (88%), Positives = 105/112 (93%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGD +SKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 272 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 116
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 220 bits (538), Expect = 4e-58
Identities = 99/112 (88%), Positives = 104/112 (92%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGD +SKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 272 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 116
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 220 bits (538), Expect = 4e-58
Identities = 99/112 (88%), Positives = 104/112 (92%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGD +SKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 272 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 116
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 220 bits (537), Expect = 5e-58
Identities = 98/112 (87%), Positives = 104/112 (92%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGD +SKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 272 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKA
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKA 116
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 220 bits (537), Expect = 5e-58
Identities = 98/112 (87%), Positives = 104/112 (92%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGD +SKR
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 272 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKA
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKA 116
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 215 bits (526), Expect = 1e-56
Identities = 93/112 (83%), Positives = 104/112 (92%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGD +SKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 272 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKA
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKA 116
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 215 bits (526), Expect = 1e-56
Identities = 93/112 (83%), Positives = 104/112 (92%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGD +SKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 272 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKA
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKA 116
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 215 bits (526), Expect = 1e-56
Identities = 93/112 (83%), Positives = 104/112 (92%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGD +SKR
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 272 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKA
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKA 116
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 206 bits (502), Expect = 9e-54
Identities = 90/121 (74%), Positives = 108/121 (89%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKR 271
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++VGD +++R
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65
Query: 272 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKALQRRR*PQ 451
GIL+LKYPIEHG+V+NWDDMEKIWHHTFYNELR+ PEEHP+LLTEAPLNPK + R + Q
Sbjct: 66 GILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPK-VNREKMTQ 124
Query: 452 I 454
I
Sbjct: 125 I 125
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 157 bits (381), Expect = 4e-39
Identities = 72/107 (67%), Positives = 83/107 (77%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKRGILTL 286
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYVG+ + R ILTL
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHANRDILTL 58
Query: 287 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 427
K P+EHGIV NWDDMEKIWH+TFYNELRV PEEHPVLLTEAP NPKA
Sbjct: 59 KDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPVLLTEAPYNPKA 105
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 128 bits (310), Expect = 2e-30
Identities = 54/71 (76%), Positives = 64/71 (90%)
Frame = +2
Query: 215 MVGMGQKDSYVGDGHKSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 394
MVGM + D +VGD +++ GILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPV
Sbjct: 1 MVGMNENDLFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPV 60
Query: 395 LLTEAPLNPKA 427
LLTEAPLNPKA
Sbjct: 61 LLTEAPLNPKA 71
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 115 bits (277), Expect = 2e-26
Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDGHKSKRGIL 280
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD VG+ R L
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELRHQL 66
Query: 281 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 421
+ YP+ +GIV NWDDME +W H FYNEL++ P + +LLT+ PLNP
Sbjct: 67 DINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNP 113
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 97.1 bits (231), Expect = 6e-21
Identities = 53/125 (42%), Positives = 73/125 (58%), Gaps = 16/125 (12%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV---GMGQKDSYVGDGHK 262
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG G+ + +D+ D K
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEK 64
Query: 263 SKRGILT-------------LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 403
KR + T + P + GIVT+WD ++ +W H F N L + P EHP+LL
Sbjct: 65 GKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLA 124
Query: 404 EAPLN 418
E PLN
Sbjct: 125 EPPLN 129
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 88.6 bits (210), Expect = 2e-18
Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 22/131 (16%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM--------VGMGQKDSYV 247
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G M +DS
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKT 64
Query: 248 -GDGHKSKR----GILTLKY---------PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE 385
+ KSKR G + Y PI+ GIV++WD ++ IW H F + L + P E
Sbjct: 65 ESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTE 124
Query: 386 HPVLLTEAPLN 418
HP+LL E PLN
Sbjct: 125 HPMLLAEPPLN 135
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 77.4 bits (182), Expect = 5e-15
Identities = 50/127 (39%), Positives = 67/127 (52%), Gaps = 21/127 (16%)
Frame = +2
Query: 104 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVG-----------------RPRHQ-GVMVGMG 229
A+V+DNG+G K GFAG+ P + P++V + +H GV +
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSKSSSKATWQTQHNAGVAADL- 66
Query: 230 QKDSYVGDGHKSK-RGILT--LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 400
D Y+GD +K R T L YPIEHG V +WD ME+ W +N LR PE+H LL
Sbjct: 67 --DFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLL 124
Query: 401 TEAPLNP 421
TE+PL P
Sbjct: 125 TESPLTP 131
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 62.5 bits (145), Expect = 2e-10
Identities = 34/110 (30%), Positives = 56/110 (50%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKRGILTL 286
+V+DNG G+ KAG G+ P V P+ + +P + + + + +
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTTLSDEIDLTSAAV--- 61
Query: 287 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKALQR 436
+ PI+ G + N D +IW H F + L +AP +LLTEAPL+ ++QR
Sbjct: 62 RRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQR 111
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 54.0 bits (124), Expect = 5e-08
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKRGILTL 286
+V+DNG+ + G+AG+ PR VF +IV RPRH+ G+ + VGD S
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKAT----GETVTIVGDLDPSMMKYFDC 77
Query: 287 -----KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNP 421
+ P + +V ++ ME I + F + +HP+L+TE NP
Sbjct: 78 TRSGPRSPFDSNVVYQFEIMEYILDYAFDRLGANGSGIDHPILITECACNP 128
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 44.0 bits (99), Expect = 6e-05
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +2
Query: 104 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKRGIL 280
ALVVD GS KAG A D +P + PS + R MV G + D + +
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR------MVDDGSSSA---DNPTTVFEDV 53
Query: 281 TLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKALQRR 439
TL PIE G++ +WD ME + + Y L E +L T+ PKA++ +
Sbjct: 54 TLD-PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQ 106
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.062
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -2
Query: 228 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 91
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At2g22330.1 68415.m02649 cytochrome P450, putative similar to
cytochrome P450 79B2 (SP:O81346) [Arabidopsis thaliana]
Length = 543
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 331 HVIPVSDDSVFDGVFEGQDTSFALVPISYIRVLLSH 224
HVIPV+ + +F+ QD FA P++Y + +LS+
Sbjct: 104 HVIPVTCPKIAREIFKQQDALFASRPLTYAQKILSN 139
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 278 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 379
L++KY + H I + W + +IW L+ P
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 278 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 379
L++KY + H I + W + +IW L+ P
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 204 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 82
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
similar to lysosomal alpha-mannosidase GI:3522867 from
[Homo sapiens]
Length = 1019
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 325 IPVSDDSVFDGVFEGQDTSFALVPISYIRVLLSHTDHHALMAGPSHDRGKH 173
+PVS ++V G++ F L+P+S I + + + A + D KH
Sbjct: 505 VPVSSENVIVKDASGKEVVFQLLPLSEIALRIRNEYVKAYLGRSPRDTAKH 555
>At4g26670.1 68417.m03842 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to SP|Q9Z0V8 Mitochondrial import inner
membrane translocase subunit TIM17 A {Mus musculus};
contains Pfam profile PF02466: Mitochondrial import
inner membrane translocase subunit Tim17
Length = 210
Score = 27.1 bits (57), Expect = 7.1
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +2
Query: 104 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSK 268
ALV +C FAGD A AV SI G G+ G K S+ G +K
Sbjct: 37 ALVTIPAPAVCLFRFAGDAAGGAVMGSIFG--YGSGLFKKKGFKGSFADAGQSAK 89
>At2g25680.1 68415.m03078 expressed protein ; expression supported
by MPSS
Length = 456
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 391 GVFLGGDTQLI-VEGMMPNLLHVIPVSDDSVFDGVFEGQDTSFALVPISYIR 239
G+ GG ++ + G+M + ++IP+S V G+ Q +FA+ + YIR
Sbjct: 114 GICTGGILFVLGISGLMQLVFNIIPLS---VVRGIQLSQGLAFAMSAVKYIR 162
>At5g13500.3 68418.m01559 expressed protein predicted protein
At2g25260 - Arabidopsis thaliana, EMBL:AC007070
Length = 358
Score = 26.6 bits (56), Expect = 9.4
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = -1
Query: 391 GVFLGGDTQLIVEGMMPNLLHVIPVSDDSVFDGVFEGQDTSFALV--PISYIRVLLSHT- 221
G +GG T+++ G NL+ IP V D + G D + ++ P ++++ L T
Sbjct: 94 GSDMGGFTRILHSGNSDNLMDEIPT---FVVDPLPPGLDRGYVVLNRPWAFVQWLERATI 150
Query: 220 -DHHALMAGPSH 188
+ + LMA P H
Sbjct: 151 KEDYVLMAEPDH 162
>At5g13500.2 68418.m01558 expressed protein predicted protein
At2g25260 - Arabidopsis thaliana, EMBL:AC007070
Length = 358
Score = 26.6 bits (56), Expect = 9.4
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = -1
Query: 391 GVFLGGDTQLIVEGMMPNLLHVIPVSDDSVFDGVFEGQDTSFALV--PISYIRVLLSHT- 221
G +GG T+++ G NL+ IP V D + G D + ++ P ++++ L T
Sbjct: 94 GSDMGGFTRILHSGNSDNLMDEIPT---FVVDPLPPGLDRGYVVLNRPWAFVQWLERATI 150
Query: 220 -DHHALMAGPSH 188
+ + LMA P H
Sbjct: 151 KEDYVLMAEPDH 162
>At5g13500.1 68418.m01557 expressed protein predicted protein
At2g25260 - Arabidopsis thaliana, EMBL:AC007070
Length = 358
Score = 26.6 bits (56), Expect = 9.4
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = -1
Query: 391 GVFLGGDTQLIVEGMMPNLLHVIPVSDDSVFDGVFEGQDTSFALV--PISYIRVLLSHT- 221
G +GG T+++ G NL+ IP V D + G D + ++ P ++++ L T
Sbjct: 94 GSDMGGFTRILHSGNSDNLMDEIPT---FVVDPLPPGLDRGYVVLNRPWAFVQWLERATI 150
Query: 220 -DHHALMAGPSH 188
+ + LMA P H
Sbjct: 151 KEDYVLMAEPDH 162
>At4g14746.1 68417.m02269 expressed protein
Length = 250
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Frame = +3
Query: 330 WRRFGIIPSTMSCVSPPRNTPSCLLRLPSTPRPYRGEDDPRFMVRKQ-------FNTPRH 488
W++F + C++P N + P+ P+P ++ F RK F+ PRH
Sbjct: 56 WKQFDQHLKFLPCITPNCNISPLITASPAQPKPPPKDNITSFFDRKSLISFFLCFSGPRH 115
Query: 489 V 491
+
Sbjct: 116 I 116
>At3g05750.1 68416.m00646 expressed protein
Length = 798
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR-HQGVMVGMGQKDSYVGDGHKSK 268
++V ++V+NG+ K GF A ++ S+ + + G +++ V + K
Sbjct: 386 KKVNKVLVENGTTTKKPGFTATSAKKSTSSSLSRKKNLSRSKKPANGVQEAGVNSDKRIK 445
Query: 269 RG--ILTLKYPIEHGIVTNWDDMEK 337
+G ++ ++ G+ T DD +K
Sbjct: 446 KGEKVIKCNITVDGGLKTGDDDRKK 470
>At1g63020.1 68414.m07117 DNA-directed RNA polymerase alpha subunit
family protein low similarity to RNA polymerase IIA
largest subunit [Trypanosoma brucei] GI:162215; contains
InterPro accession IPR000722: RNA polymerase, alpha
subunit
Length = 1453
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +2
Query: 113 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHKSKRGILTLKY 292
+ N + K +AP V S +G P V G KD V +GH G++ Y
Sbjct: 22 ISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGH---FGVINFAY 78
Query: 293 PI 298
I
Sbjct: 79 SI 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,304,701
Number of Sequences: 28952
Number of extensions: 296434
Number of successful extensions: 951
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -