Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0017
         (477 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.4  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   2.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.7  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 218 CYRVKI*IVSANTECRCQVCRVK*TLKYGRFRE 316
           C   K  I+      RCQ CR +  L  G  RE
Sbjct: 122 CREEKNCIIDKRQRNRCQYCRYQKCLNMGMKRE 154


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 280 GQVNVEIWQIPRED 321
           G + +E+W +PRE+
Sbjct: 151 GNIAMELWNMPREN 164



 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 286 VNVEIWQIPRED 321
           V +E+W IPRE+
Sbjct: 435 VLMEMWNIPREN 446


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 229 ENMNCECEH*VSV 267
           EN  CEC H V++
Sbjct: 499 ENEYCECTHVVNI 511


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,523
Number of Sequences: 336
Number of extensions: 2271
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)