Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0016
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0226 + 1715211-1716761 31 0.58
09_06_0073 + 20687057-20687246,20689004-20689203,20689786-206899... 31 0.58
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 31 0.76
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 29 1.8
11_01_0228 + 1768318-1769871 29 2.3
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 28 5.4
11_05_0023 - 18447015-18447410,18448156-18448308,18448679-184495... 27 9.4
10_06_0084 - 10477880-10477897,10477940-10478002,10479523-104795... 27 9.4
06_03_1167 + 28111923-28113218 27 9.4
>12_01_0226 + 1715211-1716761
Length = 516
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 185 QDLDKAITKFTNLNEHTDEVLQDIL 259
QD D +++F +EH+DEVL+DI+
Sbjct: 280 QDRDDVLSRFVASDEHSDEVLRDIV 304
>09_06_0073 +
20687057-20687246,20689004-20689203,20689786-20689926,
20689995-20690075,20690564-20690688,20690763-20690807,
20691853-20691877,20692282-20693073
Length = 532
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 185 QDLDKAITKFTNLNEHTDEVLQDIL 259
QD D +++F +EH+DEVL+DI+
Sbjct: 367 QDRDDVLSRFVASDEHSDEVLRDIV 391
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 295 QPPNTPLTPEQAQVVSELASTIKQNAFQLSTDHRELHAT 411
QP L+PE+ +VS STI++N F L+ D LHA+
Sbjct: 707 QPLRLDLSPEEEVIVSMNMSTIRKNGFVLAED---LHAS 742
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 289 AQQPPNTPLTPEQAQVVSELAST 357
A++PP PLTPE+A+ +E A +
Sbjct: 18 AEKPPAAPLTPEEAEAEAETAGS 40
>11_01_0228 + 1768318-1769871
Length = 517
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 188 DLDKAITKFTNLNEHTDEVLQDIL 259
D D +++F +EH+DEVL+DI+
Sbjct: 282 DRDDVLSRFVASDEHSDEVLRDIV 305
>02_05_1142 -
34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 250 RYINKVEELRREIAQQPPNTPLTPEQAQVVSELASTIKQNAF 375
R++ K ++ RR +QP P PEQ Q E A+ I+ +F
Sbjct: 439 RFLEKKKQQRRR--KQPKPKPKPPEQQQQQEEAAAAIQAPSF 478
>11_05_0023 -
18447015-18447410,18448156-18448308,18448679-18449524,
18449688-18449702
Length = 469
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 133 CFSKNDALLY*NKELRMTLPNILKRYVYSKN 41
C DAL Y +K+L PNI K Y+ ++N
Sbjct: 256 CDGSPDALHYGSKKLPSIAPNIQKLYLSTRN 286
>10_06_0084 -
10477880-10477897,10477940-10478002,10479523-10479575,
10479774-10480589,10480889-10480998,10481338-10482068
Length = 596
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 279 PQLLYFVNISCNTSSVCSFKFVNFVIALSKSCSTPIQESI 160
P +L+ + C S+C+ + +LS CST +E I
Sbjct: 229 PTMLFVTSTFCTALSLCTQYLSEVLHSLSHLCSTSCEEKI 268
>06_03_1167 + 28111923-28113218
Length = 431
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 259 NKVEELRREIAQQPPNTPLTPEQAQVVSELASTIK 363
N+ EE+R ++ + P N PL+P+ V+E+ I+
Sbjct: 349 NQNEEIRAKVIE-PSNDPLSPQTISKVAEMLPKIR 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,204,838
Number of Sequences: 37544
Number of extensions: 283141
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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