Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0013
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 99 1e-21
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 99 1e-21
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 75 5e-14
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 6e-07
11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871 29 2.0
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 28 4.6
01_01_0151 - 1346942-1347682 28 4.6
04_03_0802 - 19830614-19831275,19831426-19831507 28 6.1
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 28 6.1
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 99 bits (238), Expect = 1e-21
Identities = 46/52 (88%), Positives = 50/52 (96%)
Frame = -3
Query: 253 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 98
N IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 91 NFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 77.8 bits (183), Expect = 6e-15
Identities = 33/42 (78%), Positives = 37/42 (88%)
Frame = -1
Query: 381 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGC 256
G LEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGC
Sbjct: 48 GIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGC 89
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 99 bits (238), Expect = 1e-21
Identities = 46/52 (88%), Positives = 50/52 (96%)
Frame = -3
Query: 253 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 98
N IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 261 NFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 96.3 bits (229), Expect = 2e-20
Identities = 44/50 (88%), Positives = 48/50 (96%)
Frame = -3
Query: 253 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 104
N IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 91 NFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 77.8 bits (183), Expect = 6e-15
Identities = 33/42 (78%), Positives = 37/42 (88%)
Frame = -1
Query: 381 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGC 256
G LEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGC
Sbjct: 48 GIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGC 89
Score = 77.8 bits (183), Expect = 6e-15
Identities = 33/42 (78%), Positives = 37/42 (88%)
Frame = -1
Query: 381 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGC 256
G LEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGC
Sbjct: 218 GIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGC 259
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 74.5 bits (175), Expect = 5e-14
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = -1
Query: 381 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGC 256
G LEK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGC
Sbjct: 119 GIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGC 160
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -3
Query: 235 DEVLVAGFGRKGHAVGDIPGVRFKVVK 155
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>11_06_0555 + 24947600-24947650,24947675-24947724,24948526-24948871
Length = 148
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 457 PWRYPT*SPCKHIPLSQRRNSRRGPAPIAPFQQVGA 564
P YPT SPC H P + + R G P+ P+ GA
Sbjct: 114 PLLYPTRSPC-HRPPLRMASPRGGNFPVGPWDPPGA 148
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 328 PQMRPCTAH*ERKESDRIRPP*RLPNHIEENDE 230
PQ+RPC H E R L N++ +N+E
Sbjct: 601 PQLRPCDVHATESEVVRCYKAATLDNYVPDNEE 633
>01_01_0151 - 1346942-1347682
Length = 246
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = -1
Query: 378 PPLEKVGVEAKQPNSAIRKCVRVQ-LIKNGKKV-----TAFVPRDGCQTTSKKTTKY*WR 217
PPL + E KQ ++A ++CV G V + P C + TTK W+
Sbjct: 57 PPLYRCNDEVKQCSAACKECVEAPGDFPRGAFVCRDWYSTVDPGHMCTAPDQPTTKRPWK 116
Query: 216 --DSVVKVTPSVTFPEF 172
DS+V++ P FP F
Sbjct: 117 CCDSIVQL-PQRIFPPF 132
>04_03_0802 - 19830614-19831275,19831426-19831507
Length = 247
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 457 PWRYPT*SPCKHIPLSQRRNSRRGPA 534
P+ P PCK P +RR++R GPA
Sbjct: 135 PYPVPYPVPCKCCPHRRRRHARSGPA 160
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Frame = +1
Query: 67 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRIPPLVLR 234
T GH+++ P+ L LCR E + ++ P E E H+ DL I +
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNIAQITAC 197
Query: 235 RFLR-CGLATVTGDECGHFLSVLN 303
C + T G + +LN
Sbjct: 198 TIQSLCKIGTHAASSGGSQVILLN 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,360,326
Number of Sequences: 37544
Number of extensions: 395398
Number of successful extensions: 1012
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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