Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0012
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 75 1e-14
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 71 1e-13
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 61 1e-10
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 48 8e-07
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 46 5e-06
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 38 8e-04
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 34 0.013
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 0.38
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 29 0.50
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 0.67
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 0.88
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 27 2.0
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 2.7
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.7
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 26 3.5
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.7
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 6.2
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 8.2
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 8.2
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac... 25 8.2
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 8.2
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 74.5 bits (175), Expect = 1e-14
Identities = 33/67 (49%), Positives = 50/67 (74%)
Frame = +2
Query: 251 PCSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREVPIPE 430
P SRDIKI +++++F+G L+++ +ELN G+RYGL+G NG GKS+ L ++ R+V PE
Sbjct: 71 PMSRDIKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLESVAARDVEYPE 130
Query: 431 HIDIFHL 451
HID + L
Sbjct: 131 HIDSYLL 137
Score = 28.3 bits (60), Expect = 0.88
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 308 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREVPIPEHI 436
L +D ++ R +VG NG GKS+LL + +PI ++
Sbjct: 405 LYRDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEGNV 447
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 71.3 bits (167), Expect = 1e-13
Identities = 35/65 (53%), Positives = 41/65 (63%)
Frame = +2
Query: 257 SRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREVPIPEHI 436
S+DIKI + F G +L L L GRRYGL G NG GKS+LL AL RRE+ IP HI
Sbjct: 180 SKDIKIDGIDLAFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRREIAIPTHI 239
Query: 437 DIFHL 451
I H+
Sbjct: 240 TILHV 244
Score = 29.1 bits (62), Expect = 0.50
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 299 GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAAL 403
G +L+ +++ R G+VG NG GKS++L L
Sbjct: 530 GHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLL 564
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 61.3 bits (142), Expect = 1e-10
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +2
Query: 251 PCSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREVPIPE 430
P SRD+++ S++ +G L++D+ L L GRRYGL+ NG GKS+LL A+ +P P
Sbjct: 271 PNSRDLQVEKLSVSAWGKLLIKDSELNLINGRRYGLIAPNGSGKSTLLHAIACGLIPTPS 330
Query: 431 HIDIFHLTR 457
+D + L R
Sbjct: 331 SLDFYLLDR 339
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 266 IKIANFSITFYGSELLQDTL-LELNCGRRYGLVGLNGCGKSSLLAALRRREVP 421
IK + S + G + L L+ R LVG NG GK++L+ + + P
Sbjct: 594 IKFQDVSFNYPGGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQP 646
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 48.4 bits (110), Expect = 8e-07
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Frame = +2
Query: 278 NFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREV---PIPEHI 436
+FS+ + G LL T L L G RYG+VG NGCGKS+LL A+ +V P P+ +
Sbjct: 449 DFSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAIGDYKVENFPSPDEV 504
Score = 29.5 bits (63), Expect = 0.38
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 266 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREVP 421
+K+ N S T+ ++ L + + L+ R ++G NG GKS+L+ L +P
Sbjct: 692 LKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIP 745
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 45.6 bits (103), Expect = 5e-06
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 263 DIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREVP-IPEHI 436
D+ FS+ + LL T L L GRRYGL G NG GKS+L+ A+ +V P H+
Sbjct: 434 DLCNCEFSLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHL 492
Score = 30.7 bits (66), Expect = 0.16
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 266 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREVP 421
IK+ + S + G+ L D +++ R ++G NG GKS+L+ L +P
Sbjct: 673 IKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGELLP 726
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 38.3 bits (85), Expect = 8e-04
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Frame = +2
Query: 263 DIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREVPIPEHI 436
++ ++N S TF + L L+L G R LVG NG GKS+LL L + + HI
Sbjct: 2 EVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGHI 61
Query: 437 DIFHLTRGGARYPIRPIVSRITIHGRRF-TNVVTGKTLAFPNLIA 568
+ G + P R S G + N V + ++ LIA
Sbjct: 62 SV------GGKDPFRESSSAFVYLGTEWVNNPVIHRDMSVARLIA 100
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 34.3 bits (75), Expect = 0.013
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 266 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 397
I + + + ++G ++L D + G R+ L G NG GK++LLA
Sbjct: 265 ISMEHLNCVYWGRKVLSDINWTIREGERWALTGSNGSGKTTLLA 308
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 29.5 bits (63), Expect = 0.38
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 311 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREVPIPEHIDIFHLT 454
L + L + + +VG++G GKS+L+ LR+ +ID + LT
Sbjct: 1118 LNNVSLSIEAREKVAIVGISGSGKSTLVELLRKTYPSEDIYIDGYPLT 1165
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 29.1 bits (62), Expect = 0.50
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = +2
Query: 248 APCSRDIKIANFSITF------YGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAAL 403
AP +RD+ + SI F Y +L + G + VG +GCGKS++L L
Sbjct: 430 APDARDLVLKGGSIQFDNVHFSYNPNRPILNGCSFNIPAGAKVAFVGASGCGKSTILRLL 489
Query: 404 RR 409
R
Sbjct: 490 FR 491
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 311 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREVPIPEHIDI 442
L + +E++ + G+VG G GKS+L AL R P I+I
Sbjct: 1243 LNNINIEISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGKIEI 1286
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 0.88
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 251 PCSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALRRREVPI 424
P IK ++S+ + + +L D + + + G+VG G GKS+L AL R P
Sbjct: 1219 PSHGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPT 1278
Query: 425 PEHIDI 442
I +
Sbjct: 1279 SGDIQL 1284
Score = 26.2 bits (55), Expect = 3.5
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +2
Query: 263 DIKIANFSITFYGSELLQDTLLELNCGRRYG----LVGLNGCGKSSLLAA 400
+IK FS + G + TL +++ R G +VG G GKSSLL A
Sbjct: 579 EIKKGTFSWSGPGQNAAEPTLRDIDFVARRGELCCIVGKVGMGKSSLLEA 628
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Frame = +2
Query: 353 GLVGLNGCGKSSLLAALRRREV----PIP 427
GL+G GKSS++ LR+++V PIP
Sbjct: 314 GLIGFPNAGKSSIINTLRKKKVCNVAPIP 342
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 341 GRRYGLVGLNGCGKSSLLAALRRREVP 421
G+ GLVG NG GKS+ L L + P
Sbjct: 103 GQVLGLVGTNGIGKSTALKILSGKMKP 129
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = -1
Query: 564 IKLGNARVFPVTTFVKRRP*IVIRLTIGRIGYRAPPRVRWNMSMCSGIGTSR 409
++ + + +P+T FVKR+ +V++ G + + R R N + +SR
Sbjct: 8 VQRNDVQKYPITRFVKRKSNVVLKKNKGAMKSNSNSRSRGNKKLKESQFSSR 59
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 326 LELNCGRRYGLVGLNGCGKSSLLAALRRREVPIPEH 433
LEL GLVGL GKS+LL L + + E+
Sbjct: 231 LELKTICEIGLVGLPNAGKSTLLNCLTASKSKVGEY 266
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -3
Query: 379 STPIKSD*PISSPTIQLQESILK*LTPIESN*KVS 275
S+P++ P+ PT+QLQ S L L P E KV+
Sbjct: 437 SSPVR---PMLKPTLQLQNSPLSKLVPQEVGNKVN 468
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 305 ELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALRR 409
++L+ L + G+ VG +GCGKS+ + + R
Sbjct: 1135 KVLRGLNLTVKPGQFVAFVGSSGCGKSTTIGLIER 1169
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 541 FPSHNVCKTTAVNCNTTHYRANWVPGPPSSQ 449
FPS N KT N T + W+ G P+ +
Sbjct: 300 FPSENANKTQINIENATCSKMTWIMGSPTKE 330
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 251 PCSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALRR 409
P + I N ++++ + +L+D LE+ + +VG G GKS++ L R
Sbjct: 1175 PTLGHVSIKNLTVSYSIGQAAVLEDINLEILPKEKIAIVGRTGSGKSTMGLTLLR 1229
>SPAC821.12 |orb6||serine/threonine protein kinase
Orb6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 469
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 529 CDWENPGVPQLNCLAGHSPF 588
CDW + G CL G PF
Sbjct: 313 CDWWSLGAIMFECLIGWPPF 332
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 356 LVGLNGCGKSSLLAALR 406
+VG NG GKS+ AA+R
Sbjct: 30 IVGRNGSGKSNFFAAIR 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,829
Number of Sequences: 5004
Number of extensions: 44655
Number of successful extensions: 256
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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