Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0007
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65640.1 68414.m07446 DegP protease, putative contains simila...    29   2.1  
At1g17060.1 68414.m02075 cytochrome P450, putative 41% identical...    28   4.8  
At5g43040.1 68418.m05254 DC1 domain-containing protein contains ...    27   6.4  

>At1g65640.1 68414.m07446 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 518

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/21 (66%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +3

Query: 144 DIQN-KYVLLNYVNNKEATSL 203
           D++N K V+LNY N KEATSL
Sbjct: 479 DLENEKVVVLNYANAKEATSL 499


>At1g17060.1 68414.m02075 cytochrome P450, putative 41% identical to
           Cytochrome P450 [Catharanthus roseus] (gi|404690)
          Length = 476

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -2

Query: 470 LNSLPFYQNPLEILKTCRVTHMTFLSQKLFLRVALKVHKQYLKTSVLHKTLPYQPSF 300
           L+ LPF   P    +TC   + + L  KLFL + L+     L  S  H   P   +F
Sbjct: 412 LSFLPFSSGP----RTCIGQNFSMLQAKLFLAMVLQRFSVELSPSYTHAPFPAATTF 464


>At5g43040.1 68418.m05254 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 551

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 328 CNTDVFKYCLCTL---RATL-KKSFWLKNVICVTRHVFSIS 438
           C  +  K CLC     R T+ +K  +L  VIC+ RH   IS
Sbjct: 141 CGVNDAKSCLCLCIPCRFTIHRKCVYLPRVICINRHDHRIS 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,822,408
Number of Sequences: 28952
Number of extensions: 202295
Number of successful extensions: 373
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)