Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0006
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 155 3e-38
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 150 7e-37
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 150 7e-37
SB_56| Best HMM Match : Actin (HMM E-Value=0) 149 2e-36
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 5e-36
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 2e-26
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 2e-09
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 7e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 6e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.005
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 38 0.008
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.54
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 30 1.2
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 1.6
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 30 1.6
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 29 2.2
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 29 2.2
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.2
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 29 2.9
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 2.9
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_2537| Best HMM Match : zf-C2HC5 (HMM E-Value=2.5e-28) 29 3.8
SB_24272| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 28 5.0
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 27 8.8
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 155 bits (375), Expect = 3e-38
Identities = 81/134 (60%), Positives = 88/134 (65%)
Frame = +2
Query: 86 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGVRHR 265
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 266 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSWVSPPEEHPVLLTEAPLNPKATERKM 445
+K + PEEHPVLLTEAPLNPKA KM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 446 THIMFPKHFTRPAI 487
T IMF + F PA+
Sbjct: 121 TQIMF-ETFNSPAM 133
Score = 101 bits (243), Expect = 3e-22
Identities = 57/106 (53%), Positives = 65/106 (61%)
Frame = +1
Query: 256 EAQSKRGFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELGVAPRGTPSPAH*GSPQPQGHR 435
EAQSKRG LTLKYPIEHGIVTNWDDMEKIWHHTFYNEL VAP P P+ +R
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Query: 436 EKDDPYHVSKTFYTPRHCSVGIQTVLLAFTPFRGRYPTRDSRLGLS 573
EK + +TF +P V IQ VL + R DS G++
Sbjct: 118 EKMTQI-MFETFNSPA-MYVAIQAVLSLYASGRTTGIVMDSGDGVT 161
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 150 bits (364), Expect = 7e-37
Identities = 80/134 (59%), Positives = 87/134 (64%)
Frame = +2
Query: 86 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGVRHR 265
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 266 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSWVSPPEEHPVLLTEAPLNPKATERKM 445
+K + PEEHPVLLTEAPLNPKA KM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 446 THIMFPKHFTRPAI 487
T IMF + F PA+
Sbjct: 121 TQIMF-ETFNSPAM 133
Score = 101 bits (243), Expect = 3e-22
Identities = 57/106 (53%), Positives = 65/106 (61%)
Frame = +1
Query: 256 EAQSKRGFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELGVAPRGTPSPAH*GSPQPQGHR 435
EAQSKRG LTLKYPIEHGIVTNWDDMEKIWHHTFYNEL VAP P P+ +R
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Query: 436 EKDDPYHVSKTFYTPRHCSVGIQTVLLAFTPFRGRYPTRDSRLGLS 573
EK + +TF +P V IQ VL + R DS G++
Sbjct: 118 EKMTQI-MFETFNSPA-MYVAIQAVLSLYASGRTTGIVMDSGDGVT 161
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 150 bits (364), Expect = 7e-37
Identities = 78/134 (58%), Positives = 87/134 (64%)
Frame = +2
Query: 86 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGVRHR 265
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 266 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSWVSPPEEHPVLLTEAPLNPKATERKM 445
+K + PEEHPVLLTEAPLNPKA KM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 446 THIMFPKHFTRPAI 487
T IMF + F PA+
Sbjct: 121 TQIMF-ETFNSPAM 133
Score = 103 bits (246), Expect = 1e-22
Identities = 58/106 (54%), Positives = 65/106 (61%)
Frame = +1
Query: 256 EAQSKRGFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELGVAPRGTPSPAH*GSPQPQGHR 435
EAQSKRG LTLKYPIEHGIVTNWDDMEKIWHHTFYNEL VAP P P+ +R
Sbjct: 58 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 117
Query: 436 EKDDPYHVSKTFYTPRHCSVGIQTVLLAFTPFRGRYPTRDSRLGLS 573
EK + +TF +P V IQ VL + R DS G+S
Sbjct: 118 EKMTQI-MFETFNSPA-MYVAIQAVLSLYASGRTTGIVMDSGDGVS 161
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 149 bits (360), Expect = 2e-36
Identities = 79/132 (59%), Positives = 86/132 (65%)
Frame = +2
Query: 92 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGVRHRAK 271
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 272 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSWVSPPEEHPVLLTEAPLNPKATERKMTH 451
+ PEEHPVLLTEAPLNPKA KMT
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 452 IMFPKHFTRPAI 487
IMF + F PA+
Sbjct: 122 IMF-ETFNSPAM 132
Score = 101 bits (243), Expect = 3e-22
Identities = 57/106 (53%), Positives = 65/106 (61%)
Frame = +1
Query: 256 EAQSKRGFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELGVAPRGTPSPAH*GSPQPQGHR 435
EAQSKRG LTLKYPIEHGIVTNWDDMEKIWHHTFYNEL VAP P P+ +R
Sbjct: 57 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 116
Query: 436 EKDDPYHVSKTFYTPRHCSVGIQTVLLAFTPFRGRYPTRDSRLGLS 573
EK + +TF +P V IQ VL + R DS G++
Sbjct: 117 EKMTQI-MFETFNSPA-MYVAIQAVLSLYASGRTTGIVMDSGDGVT 160
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 147 bits (357), Expect = 5e-36
Identities = 78/132 (59%), Positives = 86/132 (65%)
Frame = +2
Query: 92 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGVRHRAK 271
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 272 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSWVSPPEEHPVLLTEAPLNPKATERKMTH 451
+ PEEHPVLLTEAPLNPKA KMT
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 452 IMFPKHFTRPAI 487
IMF + F PA+
Sbjct: 122 IMF-ETFNSPAM 132
Score = 101 bits (243), Expect = 3e-22
Identities = 57/106 (53%), Positives = 65/106 (61%)
Frame = +1
Query: 256 EAQSKRGFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELGVAPRGTPSPAH*GSPQPQGHR 435
EAQSKRG LTLKYPIEHGIVTNWDDMEKIWHHTFYNEL VAP P P+ +R
Sbjct: 57 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 116
Query: 436 EKDDPYHVSKTFYTPRHCSVGIQTVLLAFTPFRGRYPTRDSRLGLS 573
EK + +TF +P V IQ VL + R DS G++
Sbjct: 117 EKMTQI-MFETFNSPA-MYVAIQAVLSLYASGRTTGIVMDSGDGVT 160
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 116 bits (278), Expect = 2e-26
Identities = 52/60 (86%), Positives = 57/60 (95%)
Frame = +2
Query: 92 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGVRHRAK 271
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/34 (88%), Positives = 30/34 (88%)
Frame = +1
Query: 256 EAQSKRGFLTLKYPIEHGIVTNWDDMEKIWHHTF 357
EAQSKRG LTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 57 EAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 95 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 211
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 110 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 211
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2
Query: 383 EEHPVLLTEAPLNPKATERKMTHIMF 460
E+ PVLLTEAPLNPK +M +MF
Sbjct: 2144 EDFPVLLTEAPLNPKMNRERMVQLMF 2169
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 54.4 bits (125), Expect = 7e-08
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Frame = +2
Query: 104 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVG-----VRH 262
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VG +R+
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 263 RAKXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSWVSPPEEHPVLLTEAPLNPKATERK 442
+ + + FG S M+ P VLLTE PLNP K
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFG--ESKMN--IDPRNTKVLLTEPPLNPMKNREK 122
Query: 443 MTHIMFPKH 469
M +MF +
Sbjct: 123 MIEVMFENY 131
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 208 SGRDGRYGTEGLLCRSEAQSKRGFLTLKYPIEHGIVTNWDDMEKIWHHTF-YNELGVAPR 384
S + G + L+ EA R L + YP+++GIV NWDDM+ +W +TF +++ + PR
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 385 GTPSPAH*GSPQPQGHREK 441
T P +REK
Sbjct: 104 NTKVLLTEPPLNPMKNREK 122
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 80 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 226
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 208 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 92
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 386 EHPVLLTEAPLNPKATERKMTHIMFPKHFTRPAI 487
+HPVLLTEAPLNP+ K + F + F PA+
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFF-ETFNVPAL 158
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 256 EAQSKRGFLTLKYPIEHGIVTNWDDMEKIWHHTFYNELGVAP 381
EA K + T K+PI H IV +WD ME+ W + L P
Sbjct: 289 EAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEP 329
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 183 GNTARGASSPAKPALHIPEPLSTT 112
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 183 GNTARGASSPAKPALHIPEPLSTT 112
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1867
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 374 SPPEEHPV-LLTEAPLNPKATERKMTHIMFPKHFTRPAIVPS 496
SPP + V +L+ P P ++RKMT + FP P P+
Sbjct: 1481 SPPRQRKVSVLSPNPERPIPSQRKMTSVTFPTEMFEPPPAPA 1522
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 183 GNTARGASSPAKPALHIPEPLSTT 112
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 389 HPVLLTEAPLNPKATERKMTHIMFPKH 469
HP+L++EA N + K+T +MF K+
Sbjct: 34 HPLLMSEAAWNTRIKREKLTELMFEKY 60
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 241 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 131
V+LSH + H M D +HG RS SCET L T
Sbjct: 224 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 295 PIEHGIVTNWDDMEKIWHHTFYNE 366
P + G + NWD ++IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 98 EVAALVVDNGSGMCKAGFAGDDAPRAV 178
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 241 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 131
V+LSH + H M D +HG RS SCET L T
Sbjct: 419 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 241 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 131
V+LSH + H M D +HG RS SCET L T
Sbjct: 282 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 241 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 131
V+LSH + H M D +HG RS SCET L T
Sbjct: 260 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 241 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 131
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 241 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 131
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 241 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 131
V+LSH + H M D +HG RS SCET L T
Sbjct: 136 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 178 VPLDRGKAPPSGRDGRYGTEGLLCRSEAQSKRGFLTLKYPIEHGIVTNW--DDMEKIWHH 351
V L + +GR+ G+ +CR +A +TL + I G+ + D EK+W+H
Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRKKAP----LITLSHVIRMGLALSLVSDVKEKVWYH 496
Query: 352 TFYN 363
T N
Sbjct: 497 TCPN 500
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 241 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 131
++LSH + H M D +HG RS SCET L T
Sbjct: 184 IVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1513
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 260 ASLLHKSPSVPYRPSRPD---GGAFPRSRGTRREEHH 159
ASL H++PS P P P G F + G +R +H
Sbjct: 618 ASLSHETPSTPQTPRSPTSSMSGPFDNAFGRKRSPYH 654
>SB_2537| Best HMM Match : zf-C2HC5 (HMM E-Value=2.5e-28)
Length = 523
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 570 KSKPRIPGWVTAPKRCKSKKHGLNADGTMAGRVKC 466
+S R+PG P C +KHGL + T GR+ C
Sbjct: 122 RSSVRLPG--RHPCECLGQKHGLVNNCTSCGRIVC 154
>SB_24272| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1197
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 404 TEAPLNPKATERKMTHIMFPKHFTRPAIVPSAFKPC 511
++ PL+ + K ++ P FT+P+I P+ K C
Sbjct: 40 SQQPLSVHPVQGKERALILPHRFTKPSICPALRKKC 75
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 183 GNTARGASSPAKPALHIPEPLSTT 112
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 183 GNTARGASSPAKPALHIPEPLSTT 112
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 502 ECRRN---NGGACKMFWKHDMGHLSLCGLGVEGSLSEQDWVFLGGRHPAH 362
EC N NGG CK +H G+ +C G G EQD G +P H
Sbjct: 1195 ECSTNPCQNGGVCKN--EHG-GYSCVCKAGFTGKNCEQDVDECAGVNPCH 1241
>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 489 FRRHSNRASCFYTVSGPLPNPGFEAWTFRGEQG 587
FRR + C+ T + +P+P F+AWT +G
Sbjct: 454 FRRQN---CCWPTATPSIPDPAFDAWTDSAAEG 483
>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 317 VTIPCSMGYLRVRKPLLLCASLLHKSPSVP 228
V PC M LRVR C S+LH + P
Sbjct: 60 VACPCCMSLLRVRVVCPCCMSVLHVRVACP 89
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -2
Query: 347 CQIFSMSSQLVTIPCSMG--YLRVRKPLLLCASLLHKSPSVPYRPSRPDGGAFPRSRGTR 174
C + ++V CS Y+ V + C + H+ PSR D FP + R
Sbjct: 102 CSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPSRADVDVFPITCSRR 161
Query: 173 REEHHLLRNRPCTYRSH 123
HH+L + + R+H
Sbjct: 162 CVFHHVLMSMCSSSRAH 178
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 198 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 88
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 254 LLHKSPSVPYRPS--RPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPT 108
LL +S P +P+ RP GGA P++ ++ + N+ T+ PT
Sbjct: 92 LLDESTEAPPQPATIRPQGGALPQTPVKGKQNKRVSDNKEFTHAMQARRPT 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,062,131
Number of Sequences: 59808
Number of extensions: 596428
Number of successful extensions: 1704
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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