Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0002
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0219 + 1863478-1864041,1864459-1865109 33 0.23
07_03_0899 + 22421038-22422642 31 0.94
01_01_0218 + 1856104-1856700,1856814-1857452 29 2.2
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 5.0
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 28 5.0
05_04_0441 - 21271106-21271495,21271608-21271751,21272639-212727... 28 5.0
07_03_0898 - 22403337-22404950 28 6.6
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 28 6.6
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732 28 6.6
01_06_1468 + 37574124-37574180,37574275-37574346,37574437-375745... 28 6.6
01_05_0615 - 23678493-23678948,23679057-23679441,23680250-236805... 28 6.6
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 27 8.7
>01_01_0219 + 1863478-1864041,1864459-1865109
Length = 404
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = +1
Query: 85 VVDWNYPDQFSKQQALRTGALIPENALPVGIERWRNKLFVSVPRWRSGIPATLNYIPWTL 264
V D Y F A R G LI E+ +P VS+ RWR TL Y W
Sbjct: 290 VSDERYFPAFRDSCAGRRGCLIDEHYIPT---------LVSLLRWRRNANRTLTYTEWRP 340
Query: 265 HMNHPRN 285
HPR+
Sbjct: 341 RRPHPRS 347
>07_03_0899 + 22421038-22422642
Length = 534
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 375 CDRLWVFRRLALMDTTTLPNGVAPYTLKCFLTLNNLNSKL 494
C+R W RRLA + T T GV Y + L++ +L+S L
Sbjct: 330 CERRWALRRLAAITTATFGVGVVYYGMP--LSVGSLSSDL 367
>01_01_0218 + 1856104-1856700,1856814-1857452
Length = 411
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 202 VSVPRWRSGIPATLNYIPWTLHMNHPRN 285
VS+ RWR TL Y+ W HPR+
Sbjct: 327 VSLLRWRRNANRTLTYMEWRPRSPHPRS 354
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 114 LEAAGSQDWCSDTRERTARWYRKVEEQIVRQRS*VALRYSSYFELHSLDAP 266
L AGS D E T RW R +E I+RQ S + ++ F++ +L P
Sbjct: 1470 LMMAGSNDSIEMWDELTRRWNRVIE--IMRQNSVKKMTWNLKFQIQALKYP 1518
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 114 LEAAGSQDWCSDTRERTARWYRKVEEQI 197
+E S+ CS+T E+ RWY + +E++
Sbjct: 246 IETIRSEFSCSETCEKLQRWYGETDEEV 273
>05_04_0441 -
21271106-21271495,21271608-21271751,21272639-21272746,
21272846-21272859,21273103-21273154,21273592-21273656,
21274447-21274579,21275260-21275341,21275639-21275715,
21276037-21276093
Length = 373
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 423 TLPNGVAPYTLKCFLTLNNLNSKLIRKNTLF 515
TLP GV +C L ++NLN+ I ++ LF
Sbjct: 174 TLPPGVTGTNERCTLIVSNLNTDKINEDKLF 204
>07_03_0898 - 22403337-22404950
Length = 537
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 378 DRLWVFRRLALMDTTTLPNGVAPYTLKCFLTLNNLNSKL 494
+R W F+RLA M T + GV Y L L++ +L+S L
Sbjct: 323 ERRWAFQRLAAMMTASFGVGVVYYGLP--LSVGSLSSDL 359
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 85 VVDWNYPDQFSKQQALRTGALIPENALPVGIERWRNK 195
+VD DQ K +R I E+ P G ++WRNK
Sbjct: 146 LVDELLSDQHLKNYRMRKVREIQESRTPGGSQKWRNK 182
>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
Length = 1050
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 67 LGALSLLMLVNLAHRKLKTSLP 2
LGALS+L +NL+H L S+P
Sbjct: 614 LGALSMLEALNLSHNTLNGSIP 635
>01_06_1468 +
37574124-37574180,37574275-37574346,37574437-37574513,
37574897-37574978,37576005-37576069,37576313-37576354,
37576452-37576503,37576631-37576679,37576784-37576797,
37576942-37577049,37577129-37577272,37577421-37577810
Length = 383
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 423 TLPNGVAPYTLKCFLTLNNLNSKLIRKNTLF 515
TLP GV+ +C L ++NLN+ I ++ LF
Sbjct: 184 TLPPGVSGINDRCTLLVSNLNTDKIDEDKLF 214
>01_05_0615 -
23678493-23678948,23679057-23679441,23680250-23680545,
23680983-23681504
Length = 552
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = -3
Query: 227 PERHLGTLTNNLFLHLSIPTGSAFSGIRAPVLRACCFE---NWSG*FQSTTFHENISW 63
P L L + LFL+L I S + PV ACC E W G S +E W
Sbjct: 166 PVFQLEKLKSILFLYLIIEMSSENVQLMLPVFSACCEELISRWMGSIGSDGSYEVDCW 223
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +3
Query: 18 SFLWARFTSISNDKAPRNILVERGRLELPGPVLEAAGSQDWCSDTRERTARWYRKVEEQI 197
S W + ++N + NI + EL P EA + S + E +A W+ K++ +
Sbjct: 372 SISWEQEALLTNLRLTLNISTDEHLAELRRPKSEACKASFCRSMSMEESATWFAKLQRDL 431
Query: 198 VRQRS*VALRYSSYFE 245
+ L YF+
Sbjct: 432 QSEYDLQRLCKRPYFK 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,628,432
Number of Sequences: 37544
Number of extensions: 384959
Number of successful extensions: 979
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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