Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0164
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    40   0.002
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    39   0.003
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c...    38   0.006
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic...    32   0.38 
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    30   1.5  

>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical to
            chromomethylase CMT2 [Arabidopsis thaliana] GI:14583094
          Length = 1295

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
 Frame = +2

Query: 476  AKSQWDTSADENAEYXVERIL*V---HHKKNGKR--EFLIHWKGWSSKFDSWEPESNL-N 637
            + S  D  +D   EY VE+++ +    H K GK   +F +HWKG+ S  D+WE    L N
Sbjct: 824  SSSSSDDDSDSE-EYEVEKLVDICFGDHDKTGKNGLKFKVHWKGYRSDEDTWELAEELSN 882

Query: 638  CSE 646
            C +
Sbjct: 883  CQD 885



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 269 KGKLHYLIRWKGYSADSDTWEPEQTLS-CPELIGKF 373
           K  L + + WKGY +D DTWE  + LS C + I +F
Sbjct: 855 KNGLKFKVHWKGYRSDEDTWELAEELSNCQDAIREF 890


>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +2

Query: 269 KGKLHYLIRWKGYSADSDTWEPEQTL-SCPELIGKF 373
           KGK+ YLI+W+G+   ++TWEP + L S  ++I  F
Sbjct: 120 KGKVQYLIKWRGWPETANTWEPLENLQSIADVIDAF 155



 Score = 36.3 bits (80), Expect = 0.023
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 554 KNGKREFLIHWKGWSSKFDSWEPESNL 634
           + GK ++LI W+GW    ++WEP  NL
Sbjct: 119 RKGKVQYLIKWRGWPETANTWEPLENL 145


>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
           chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
           thaliana]
          Length = 791

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = +2

Query: 506 ENAEYXVERIL*VHH---KKNGKR--EFLIHWKGWSSKFDSWEPESNL-NCSE 646
           E  E+ VE+ L +     +  G++  + ++ WKG++S +D+WEP S L NC E
Sbjct: 335 EPGEFEVEKFLGIMFGDPQGTGEKTLQLMVRWKGYNSSYDTWEPYSGLGNCKE 387



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 278 LHYLIRWKGYSADSDTWEPEQTL-SCPELIGKF 373
           L  ++RWKGY++  DTWEP   L +C E + ++
Sbjct: 360 LQLMVRWKGYNSSYDTWEPYSGLGNCKEKLKEY 392


>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
           to chromomethylase CMT3 [Arabidopsis thaliana]
           GI:14583092, GI:14647157
          Length = 839

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 260 KKIKGKLHYLIRWKGYSADSDTWEPEQTLS-CPELIGKF 373
           K +K  L+  +RW  Y    DTWEP + LS C   I +F
Sbjct: 397 KLLKRGLYLKVRWLNYDDSHDTWEPIEGLSNCRGKIEEF 435


>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
           identical to chromatin remodeling factor CHD3
           [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 245 KILDSKKIKGKLHYLIRWKGYSADSDTWEPEQTLS 349
           +IL  ++  G+L YL+++K  S D   WE E  +S
Sbjct: 194 RILACREEDGELEYLVKYKELSYDECYWESESDIS 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,663,886
Number of Sequences: 28952
Number of extensions: 212056
Number of successful extensions: 588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)